View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_high_15 (Length: 249)
Name: NF21521_high_15
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 660523 - 660780
Alignment:
| Q |
1 |
ctataacaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaata |
100 |
Q |
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| T |
660523 |
ctatagcaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacagataatcaaggtctaaacaagtaaaccattgtaata |
660622 |
T |
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| Q |
101 |
tga-----------------cgtaaccaagctttcaacataatcctggacattgaaccaccaagattttttgattctctttacgcttttatctctcctat |
183 |
Q |
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| T |
660623 |
tgaacttacattcaacaatacgtaaccaagctttcaacataatcctggacattgaaccaccaagattttttgattctctttatgcttttatctctccaat |
660722 |
T |
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| Q |
184 |
tatagagaattgctgaactttcacaactggttttcaataaatagtgtatcattcttctc |
242 |
Q |
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| T |
660723 |
tatagagaattgctgaactttcacaactggttttcaat-aatagtgtatcattcttctc |
660780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 22070827 - 22070781
Alignment:
| Q |
34 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
80 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||| |
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| T |
22070827 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
22070781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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