View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21521_high_2 (Length: 641)

Name: NF21521_high_2
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21521_high_2
NF21521_high_2
[»] chr1 (1 HSPs)
chr1 (4-629)||(50530151-50530766)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 4 - 629
Target Start/End: Complemental strand, 50530766 - 50530151
Alignment:
Q  4 tgtataaagtaaggtagaaacttcataattaaaaaataaataaaatgaatgaattatggtaggaatatttatattannnnnnngaccaggggaatgaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  50530766 tgtataaagtaaggtagaaacttcataattaaaaaataaataaaatgaatgaattatggtaggaatatttatattatttttttgaccaggggaatgaata 50530667  T
Q  104 tttataaacgtaagagtatggtaaaataataaatagcattatccttagctatgatttgatactttactggttactagttcagtgaactaaaacagtgaaa 203  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50530666 tttataaacgtaacagtttggtaaaataataaatagcattatccttcgctatgatttgatactttactggttagtagttcagtgaactaaaacagtgaaa 50530567  T
Q  204 ctgttcacagcaatctttttgcactttgttgcnnnnnnnnnnnnnnnngggttataaaagctgtctttcaaacccatccataacgcacatcatcacacac 303  Q
    ||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530566 ctgttcacagcaatctttttgcactttgttgcagagaga----------ggttataaaagctgtctttcaaacccatccataacgcacatcatcacacac 50530477  T
Q  304 agaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgctaaaactccctctcgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530476 agaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgctaaaactccctctcgc 50530377  T
Q  404 tttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgcgttcgagctaggtccggtaacagcatgcgcaaaaccctccgttggtttg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  50530376 tttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgtgttcgagctaggtccggcaacagcatgcgcaaaagcctccgttggtttg 50530277  T
Q  504 acttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggcccttccgttgttctatc 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530276 acttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggcccttccgttgttctatc 50530177  T
Q  604 ttacgccattgccggtttctgtgctc 629  Q
    ||||||||||||||||||||||||||    
T  50530176 ttacgccattgccggtttctgtgctc 50530151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University