View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_high_21 (Length: 222)
Name: NF21521_high_21
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 28731721 - 28731551
Alignment:
| Q |
5 |
ttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
28731721 |
ttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgttgtcaccgccactgaaggaatcgaa |
28731622 |
T |
|
| Q |
105 |
gcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731621 |
gcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
28731551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 28731477 - 28731435
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28731477 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
28731435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 38122147 - 38121977
Alignment:
| Q |
5 |
ttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaa |
104 |
Q |
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|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
38122147 |
ttcaaccttttcctctatgcgattctctatgctcttcttcgcaatcttcttcaccgccatgctttccggtgacgaggtcaccgccactgaaggaatcgaa |
38122048 |
T |
|
| Q |
105 |
gcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38122047 |
gcttcattcccaccgccacctccgcacgatcttcaagaacattcgttcttctctcaaactgcattacttcc |
38121977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 38607979 - 38608146
Alignment:
| Q |
5 |
ttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaa |
104 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
38607979 |
ttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaaggtttcgaa |
38608075 |
T |
|
| Q |
105 |
gcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38608076 |
ccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38608146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 38792762 - 38792929
Alignment:
| Q |
5 |
ttcaaccttttcctctctgcgattctcgatgctcttcttcgcaatcttcttcaccgccatgctttctggtgacgtcgtcaccgccactgaaggaatcgaa |
104 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |
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|
| T |
38792762 |
ttcaaccttttcttctcttcgattctcgatgctctt---cgcaatcttcttcaccgtcatgctttccggtgacaaggtcaccgccactgaaggtttcgaa |
38792858 |
T |
|
| Q |
105 |
gcttcattcccaccgccacctccacatgatcttcaagaacattcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
38792859 |
ccttcaatcccaccgctacctccacatgatcttcaagaacattcgttcttctctcacaccacattacttcc |
38792929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 38121903 - 38121861
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38121903 |
acttcccctgcttggaccggtcctttcaccattttcgctccct |
38121861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 31529431 - 31529389
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
31529431 |
acttcccctgcttggaccggtcctttcactattttcgctccct |
31529389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 51801499 - 51801457
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
51801499 |
acttcccctgcttggaccggtcctttcactattttcgctccct |
51801457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 31529533 - 31529505
Alignment:
| Q |
147 |
tcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31529533 |
tcgttcttctctcacactgcattacttcc |
31529505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 51801601 - 51801573
Alignment:
| Q |
147 |
tcgttcttctctcacactgcattacttcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
51801601 |
tcgttcttctctcacactgcattacttcc |
51801573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 34875789 - 34875831
Alignment:
| Q |
170 |
acttcccttgcttggaccggtcctttcaccattttcgctccct |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||| |
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|
| T |
34875789 |
acttcccctgcttggaccggtcctttcactatttttgctccct |
34875831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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