View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21521_high_3 (Length: 623)
Name: NF21521_high_3
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 610
Target Start/End: Original strand, 50441708 - 50442305
Alignment:
| Q |
17 |
cataggaattccttgcttgttctacaagaaaccacatttcttagtgagcaagcaacatggtgatattacacataatagaactagatgtgtgaaggtgtat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50441708 |
cataggaattccttgcttgttctacaagaaaccacatttcttagtgagcaagcaacatggtgatattacacataatagaactagatgtgtaaaggtgtat |
50441807 |
T |
|
| Q |
117 |
gaatctaacctttttcactttgctccaacaccaaatttatgtctgattggtcttgttcgatagtagtttgactaacttgtaggggggaaatgttcggagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50441808 |
gaatctaacctttttcactttgctccaacaccaaatttatgtctgattggtcttgttcgatagtagtttgactaacttgtagaggggaaatgttcggagc |
50441907 |
T |
|
| Q |
217 |
aggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaatatct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50441908 |
aggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaatatct |
50442007 |
T |
|
| Q |
317 |
gataccttgaatcttctgatatg----nnnnnnnnnnttccttaagaaattgaatacatacagataaaaatctcttaaccaagctagaaatttaaacttt |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442008 |
gataccttgaatcttctgatatgaaaaaaaaaaaaaattccttaagaaattgaatacatactgataaaaatctcttaaccaagctagaaatttaaacttt |
50442107 |
T |
|
| Q |
413 |
tattaatgtttggagatataaagttgaaacagtgcaatctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaact |
512 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442108 |
tattaatgtttggcgatataaagttgaaacagtgcaatctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaact |
50442207 |
T |
|
| Q |
513 |
agaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatctgatg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50442208 |
agaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatg |
50442305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 50421700 - 50421876
Alignment:
| Q |
160 |
tgattggtcttgttcgatagtagtttgactaacttgtaggggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgcca |
259 |
Q |
| |
|
|||||||| | ||||||| |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
50421700 |
tgattggtatagttcgatggtagtttggttaacttgcagaggggaaatgtttggagcaggacgagaggcagatcgcatcgattgaatctttcctttatta |
50421799 |
T |
|
| Q |
260 |
atgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgat |
336 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50421800 |
atgacataaactgtgcaaaaatttggtgccatttttgacactgttccaggaatatcgaataccttgaatcttctgat |
50421876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 50446857 - 50447019
Alignment:
| Q |
175 |
gatagtagtttgactaacttgtaggggggaaatgttcggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgta |
274 |
Q |
| |
|
||||||||||| | | ||||||| |||||||| || ||| ||| || |||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50446857 |
gatagtagtttaattggcttgtagaggggaaatttttggaacagaactagaagcaggtcgcattgattgaatctttccattgccaatgacatagactgta |
50446956 |
T |
|
| Q |
275 |
caaaaatctggtgccccttttgacactgttccaggaatatctgataccttgaatcttctgata |
337 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
50446957 |
cagaaatctggtgccccttttgacaccgttccagaaatatctgttgccttgaatattctgata |
50447019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 457 - 610
Target Start/End: Original strand, 50447057 - 50447206
Alignment:
| Q |
457 |
ttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagaga |
556 |
Q |
| |
|
|||||| ||||||||| || |||||||| |||||| |||||| || |||||| ||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
50447057 |
ttacatgttgattattgtttgtgttaattctcagaagggatgg----taagaaactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaa |
50447152 |
T |
|
| Q |
557 |
aatggatgtatacttgagcaaactagtttttgttgaagagccaagaatctgatg |
610 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
50447153 |
aatggatgcatacttgtgcaaactagtttttgctgaagagccaagaatcagatg |
50447206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 50446756 - 50446841
Alignment:
| Q |
22 |
gaattccttgcttgttctacaagaaaccacatttcttagtgagcaagcaacatggtgatattacacataatagaactagatgtgtg |
107 |
Q |
| |
|
|||| |||| ||||||||| || ||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50446756 |
gaatacctttcttgttctaaaataaatcacatttctttgtgagcaataaacattttgatattacacataatagaactagatttgtg |
50446841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 603
Target Start/End: Original strand, 50421965 - 50422066
Alignment:
| Q |
502 |
ggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaag |
601 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||| || ||| ||| |||||| | |||| |||| ||||| |||||| ||| | ||||||| |||||||| |
|
|
| T |
50421965 |
ggtagaaaactagaagctaaaagtaaactttgcaacatgctatgctacttataaaaatagatgcatactcaagcaaattagctcttgttgaggagccaag |
50422064 |
T |
|
| Q |
602 |
aa |
603 |
Q |
| |
|
|| |
|
|
| T |
50422065 |
aa |
50422066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 212 - 337
Target Start/End: Complemental strand, 1271277 - 1271152
Alignment:
| Q |
212 |
ggagcaggacgagaagcagatcgcatcgattgaatctttcctttgccaatgacatagactgtacaaaaatctggtgccccttttgacactgttccaggaa |
311 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||| | |||| | |||| |
|
|
| T |
1271277 |
ggagcagcacgagaagctgatcgcattgattgaatttttcctttaccaacaacatatactgtacaaaaatctggtgccccttttgatattgttgctggaa |
1271178 |
T |
|
| Q |
312 |
tatctgataccttgaatcttctgata |
337 |
Q |
| |
|
||||| |||||||| ||||||||| |
|
|
| T |
1271177 |
tatctaccaccttgaaccttctgata |
1271152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University