View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21521_high_4 (Length: 604)
Name: NF21521_high_4
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 24 - 585
Target Start/End: Complemental strand, 32240391 - 32239831
Alignment:
| Q |
24 |
gacagataaaatgcattgtttaatcaaccaatccaagtgaaaattaaattaaaacagggggatttcagaatctctgaacaaaagacaaaattttcaaacc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240391 |
gacagataaaatgcattgtttaatcaaccaatccaagtgaaaattaaattaaaacaggggggtttcagaatctctgaacaaaagacaaaattttcaaacc |
32240292 |
T |
|
| Q |
124 |
ttctgacaaaagtttaacaccttttataggtgctctgtgagtggaaaccccagagagcaccgtagaagcctataaaccacacacnnnnnnnnnnnnnnnn |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32240291 |
ttctgacaaaagtttaacaccttttataggtgctctgtgagtggaaaccccagagagcaccgcagaagcctataaaccacacacaaaaaaaaagaaagta |
32240192 |
T |
|
| Q |
224 |
nnnnnggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagtagcagcagaagcgaagaagggcggatcccgctggtagt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240191 |
aaaa-ggaacaggcgtagcacccagctacatatcctcagaaaccagaaaacccacagagagcagcagcagaagcgaagaagggcggatcccgctggtagt |
32240093 |
T |
|
| Q |
324 |
gtatggaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatacaaaaagcctacatctctaacccattactttcaccataat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32240092 |
gtatggaacagttggatttgaagaggttctattgtaagattaatagatcacattagaatacaaaaagcctgcatctctaacccattactttcaccataat |
32239993 |
T |
|
| Q |
424 |
atagcacacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaagaggtaaaaaacaaaatagaaatagcagatatagaacac |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239992 |
atagcacacagaagtagcacctagctatgaaattggctgaaaacaaccagccactgcaaaagaggtaaaaaacaaaatagaaatagcagatatagaacac |
32239893 |
T |
|
| Q |
524 |
agctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32239892 |
agctacaaaacctccatgcacagaaaaccgacagaaatcagcgccaaatgcggagaagggcg |
32239831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 513 - 581
Target Start/End: Complemental strand, 46470181 - 46470113
Alignment:
| Q |
513 |
atatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaag |
581 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
46470181 |
atatagaacacagctacaaagcctccaagcacagaaaactgacataaatcagcgccaattgcggagaag |
46470113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 585
Target Start/End: Complemental strand, 33435811 - 33435770
Alignment:
| Q |
544 |
cagaaaactgacagaaatcagcgccaaatgcggagaagggcg |
585 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
33435811 |
cagaaaactgacagagttcagcgccaaacgcggagaagggcg |
33435770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University