View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_high_7 (Length: 474)
Name: NF21521_high_7
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 22 - 471
Target Start/End: Complemental strand, 14738854 - 14738405
Alignment:
| Q |
22 |
tacatgtattgggtgagttatactatgtactcaatccatttagctaactaacaatgccattgaagtatctaatcatttttgtattaatattgtaaccttc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
14738854 |
tacatgtattgggtgagttatactatgtactcaatccatttagctaactaacaatgccattgcagtatctaatcatttttgtattaatactgtaaccttc |
14738755 |
T |
|
| Q |
122 |
aacttagggttgtaaccattgtattgaatgaatttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgacagtaat |
221 |
Q |
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| T |
14738754 |
aacttagggttgtaaccattgtattgaatgaatttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgacagtaat |
14738655 |
T |
|
| Q |
222 |
gtttgagacacaggctctggtgttatcttttcctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14738654 |
gtttgagacacaggctctggtgttatcttttcctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcat |
14738555 |
T |
|
| Q |
322 |
ccagtttgtatagaaatacaatcatctcctgcatatcatagttgaaatcttttaaattcgaaataaaacttaaccaacataaactgcttaattgaattct |
421 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14738554 |
ccagtttgtatagaaatgcaatcatctcctgcatatcatagttgaaatcttttaaatttgaaataaaacttaaccaacataaactgcttaattgaattct |
14738455 |
T |
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| Q |
422 |
attagtctacattatattccctagtttttgttttatataagtcctatgtt |
471 |
Q |
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| T |
14738454 |
attagtctacattatattccctagtttttgttttatataagtcctatgtt |
14738405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 154 - 356
Target Start/End: Original strand, 27295951 - 27296153
Alignment:
| Q |
154 |
tttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgacagtaatgtttgagacacaggctctggtgttatcttttc |
253 |
Q |
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||||||||||||||||||||||| ||||||||||||| || || ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| |
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| T |
27295951 |
tttacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttc |
27296050 |
T |
|
| Q |
254 |
ctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagtttgtatagaaatacaatcatctcctgc |
353 |
Q |
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| T |
27296051 |
ctagacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacatttgagcatccagtttgtatagaaatacaatcatctcctgc |
27296150 |
T |
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| Q |
354 |
ata |
356 |
Q |
| |
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||| |
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|
| T |
27296151 |
ata |
27296153 |
T |
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Back To:
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