View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21521_high_8 (Length: 472)
Name: NF21521_high_8
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 31718230 - 31718680
Alignment:
| Q |
1 |
ctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaattcgtgtcaagatgcatcagatgaatgccttaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
31718230 |
ctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaattcgtgtcaatatgcatcagatgaatgccttaaga |
31718329 |
T |
|
| Q |
101 |
gtgaatcgatcgatttccatgtgcctagccaccctcagtatgatattgaacttcaataactctttggtttggaaatgttgtaaaatttggctgttgcatt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31718330 |
gtgaatcg----atttccatgtgcctagccacccccagtatgatattgaacttcaataactctttggtttggaaatgttgtaaaatttggctgttgcatt |
31718425 |
T |
|
| Q |
201 |
ggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatcaatactagacagtccttgactacaattgacatgatgtgttctttatttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31718426 |
ggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatgaatactagacagtccttgactacaattgacatgatgtgttctttatttg |
31718525 |
T |
|
| Q |
301 |
ctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtacacatattacctcaacaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31718526 |
ctaatggaatgtaaggtattgattttctgattagtgacaggtttactcggtagaatatgatgcgagtgcatccgaaatgtacacatattacctcaacaaa |
31718625 |
T |
|
| Q |
401 |
ttataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatg |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31718626 |
ttataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatg |
31718680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 284 - 451
Target Start/End: Complemental strand, 31011383 - 31011216
Alignment:
| Q |
284 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
383 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
31011383 |
gatgtgttctttatttgcaaatgaaatgtgagttattgatcctctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31011284 |
T |
|
| Q |
384 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaa |
451 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
31011283 |
cgcattacctcatcaaattataatccattaattggttggatgcatggagctcagatggttgcatttaa |
31011216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 451
Target Start/End: Original strand, 31709954 - 31710120
Alignment:
| Q |
284 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
383 |
Q |
| |
|
|||||||||||||||| | |||| ||||| || |||||| | |||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
31709954 |
gatgtgttctttatttccaaatgaaatgtgagttattgacct-ctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31710052 |
T |
|
| Q |
384 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaa |
451 |
Q |
| |
|
| ||||||||| ||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
31710053 |
cgcattacctcatcaaattataatccattaattgggtggatgcatggagctcagatggttgcatttaa |
31710120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 448
Target Start/End: Original strand, 35552268 - 35552319
Alignment:
| Q |
397 |
caaattataatccattagttgggtggatgcatgaagctaaaatggttgcatt |
448 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||| ||||||||||||| |
|
|
| T |
35552268 |
caaattataatccattaattgggtggattcatggagctcaaatggttgcatt |
35552319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University