View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_high_9 (Length: 456)
Name: NF21521_high_9
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 2018623 - 2019071
Alignment:
| Q |
1 |
aatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaagg |
100 |
Q |
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| T |
2018623 |
aatccttacgcctcacttgtggctcccattttaccttcgagttcgaggacgtcgaagaagatgctttcgacctcttcctttatagactgtcgttcaaagg |
2018722 |
T |
|
| Q |
101 |
aattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagaaaatgttact |
200 |
Q |
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| T |
2018723 |
aattcaggaactcgatctctgcttggtcactttaatcgaattgccttttggcttctacacttgcaataatcttgtcacacttaagctagacaatgttact |
2018822 |
T |
|
| Q |
201 |
ttcaaagatggctcttcctatatcaattttccattactcaaatccctaaatttgaacgacgtcgtctttggaaaccgtgctaacatgttggacnnnnnnn |
300 |
Q |
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| T |
2018823 |
ttcaaagatggctcttcctatatcaattttccattactcaaatcccttaatttgaacgacgtcgtctttggaaatcgtgctaacatgtttgacttttttt |
2018922 |
T |
|
| Q |
301 |
gcggatgtcccaatgttgaagatgtagaagtgacttcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2018923 |
gcggatgtcccaatgttgaagatgtagaagtgacatcactatcaatagttaatagtcgcattcctcagccaccagaagagggggttgaagccttaccaaa |
2019022 |
T |
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| Q |
401 |
gttggtcagagcaaaaatttcagaattatatagcatgttacctttgctt |
449 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2019023 |
gttggtcagagcaaaaatttcagaattacatagcatgttacctttgctt |
2019071 |
T |
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