View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_12 (Length: 402)
Name: NF21521_low_12
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 14739331 - 14738945
Alignment:
| Q |
16 |
cttaattcaccaaaagtctgccagcaaaatggatcatatagatgatatttttcttgaattggttttaactcaacagtggttaaagaaacatctacacatg |
115 |
Q |
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| T |
14739331 |
cttaattcaccaaaagtctgccagcaaaatggatcatatagatgatatttttcttgaattggttttaactcaacagtggttaaagaaacatctacacatg |
14739232 |
T |
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| Q |
116 |
gcaggctatcactgcaagcaaagtgtactggtttaactgtgtatgttccttttattctttcgtagttgattcctgctagagacactgctgatgtgtgatt |
215 |
Q |
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| T |
14739231 |
gcaggctatcactgcaagcaaagtgtactggtttaactgtgtatgttccttttattctttcgtagttgattcctgctagagacactgctgatgtgtgatt |
14739132 |
T |
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| Q |
216 |
tgtgcatacccttttatcacaatagaattggtctattacaattggaagttgaacttctgaaacttgtatgtttgagaataatactccctgtactgaacca |
315 |
Q |
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| T |
14739131 |
tgtgcatacccttttatcacaatagaattggtctattacaattggaagttgaacttctgaaacttgtatgtttgagaataatactccctgtactgaacca |
14739032 |
T |
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| Q |
316 |
gatccaccctgcagatgttttaacttttgtgagatatatctaacttaatgcatcaaactcttaaattatggaagcattgggtttcac |
402 |
Q |
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| T |
14739031 |
gatccaccctgcagatgttttaacttttgtgagatgtatctaacttaatgcatcaaactcttaaattatggaagcattgggtttcac |
14738945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 27295452 - 27295759
Alignment:
| Q |
21 |
ttcaccaaaagtctgccagcaaaatggatcatatagatgatatttttcttgaattggttttaactcaacagtggttaaagaaacatctacacatggcagg |
120 |
Q |
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||||||| | |||| ||| || ||||||||||| ||||| ||||| ||||||| |||| |||||||||| | |||||||||||||||| ||| |||| | |
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| T |
27295452 |
ttcaccatatgtctcccaacagaatggatcataaagatggtatttatcttgaacaggttgtaactcaacacttgttaaagaaacatctatacaaggcaag |
27295551 |
T |
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| Q |
121 |
ctatcactgcaagcaaagtgtactggtttaactgtgtatgttccttttattctttcgtagttgattcctgctagagacactgctgatgtgtgatttgtgc |
220 |
Q |
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| T |
27295552 |
ctatcactgcatgcaaagtgaaccggcttaactgtgtatgttccctttataccttcatagttgattcctgtgagagccacagctgctgtttgatttttgc |
27295651 |
T |
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| Q |
221 |
atacccttttatcacaatagaattggtctattacaattggaagttgaacttctgaaacttgtatgtttgagaataatactccctgtactgaaccagatcc |
320 |
Q |
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| T |
27295652 |
agtttcttttatcgcagtagaattgatcgattattatcggaacttgaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatcc |
27295751 |
T |
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| Q |
321 |
accctgca |
328 |
Q |
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|||||||| |
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| T |
27295752 |
accctgca |
27295759 |
T |
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