View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21521_low_13 (Length: 398)
Name: NF21521_low_13
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 5822998 - 5822635
Alignment:
| Q |
16 |
atgaacaccttcaaacaccacggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctccaaaaatttagctgcttcaatcg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
5822998 |
atgaacaccttcaaacaccacggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctccaaaaatttagctacttcattcg |
5822899 |
T |
|
| Q |
116 |
gccgttctaaaaatatatttggattatctaatacgttcatcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822898 |
gccgttctaaaaatatatttggattatctaatacgttcatcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaa |
5822799 |
T |
|
| Q |
216 |
ggagtaaacgtcacatttatctgtgaaagtattggttcggacatactccggtgccatgtaaaacaatgtacctatcaacaaaaccaaagcatatatggta |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822798 |
ggagtaaacatcacatttatctgtgaaagtattggttcggacatactctggtgccatgtaaaacaatgtacctatcaacaaaaccaaagcatatatggta |
5822699 |
T |
|
| Q |
316 |
aaatgtccgatttttatcactattattga-aaaactttagtctaacattaaaagagatcagagt |
378 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5822698 |
aaatgttcgatttttatcactattattgaaaaaactttagtctaacattaaaagagatcagagt |
5822635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 36 - 276
Target Start/End: Original strand, 4906662 - 4906902
Alignment:
| Q |
36 |
cggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctccaaaaatttagctgcttcaatcggccgttctaaaaatatattt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | || | | |||| |||| || | |
|
|
| T |
4906662 |
cggcgcaatcaatctcatgagaatgggatcaataatctcattagctgggaacctctccaaaaagttagctggattaaatgacttttctgaaaaccaatat |
4906761 |
T |
|
| Q |
136 |
ggattatctaatacgttcatcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacgtcacatttat |
235 |
Q |
| |
|
| | |||||| | | |||||||||| |||||||||| ||||| ||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4906762 |
gtgtcatctaacatgatcatcttatcgaagatggtattcttgtaatttgtgcatgctacttgaagtagaaccataccaaaggagtaaacgtcagatttat |
4906861 |
T |
|
| Q |
236 |
ctgtgaaagtattggttcggacatactccggtgccatgtaa |
276 |
Q |
| |
|
|||||||||| |||||| ||||||||| | |||||||||| |
|
|
| T |
4906862 |
ctgtgaaagtgttggttaggacatactttgctgccatgtaa |
4906902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 4903285 - 4903524
Alignment:
| Q |
36 |
cggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctccaaaaatttagctgc-ttcaatcggccgttctaaaaatatatt |
134 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| || ||| | |||||||||||||| ||||||| ||| || | | ||||||||| || |
|
|
| T |
4903285 |
cggcgctattaatctcatgagaatgggatcaataatcttatcagcagggaacctctccaaaaagttagctggattcgat-gacttttctaaaaaccgatc |
4903383 |
T |
|
| Q |
135 |
tggattatctaatacgttcatcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacgtcacattta |
234 |
Q |
| |
|
| || ||||| | | ||||||||||||||| |||| || || ||||| | | || |||||| ||||||||||||||| || ||||| ||||||||| |
|
|
| T |
4903384 |
tttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacattta |
4903483 |
T |
|
| Q |
235 |
tctgtgaaagtattggttcggacatactccggtgccatgta |
275 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || |||||||| |
|
|
| T |
4903484 |
tctgtgaatgtattggttcggacacactctggcgccatgta |
4903524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 4929069 - 4929022
Alignment:
| Q |
198 |
aagtagaaccataccaaaggagtaaacgtcacatttatctgtgaaagt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4929069 |
aagtagaaccataccaaaggagtaaacgtcacatttatctgtgtaagt |
4929022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 4923858 - 4923820
Alignment:
| Q |
201 |
tagaaccataccaaaggagtaaacgtcacatttatctgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4923858 |
tagaaccataccaaaggagtaaacgtcagatttatctgt |
4923820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 4923956 - 4923900
Alignment:
| Q |
36 |
cggcgcaatcaatctcatgagaatgggatcaataatctcataagctgcaaacctctc |
92 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || | ||||| |||||||| |
|
|
| T |
4923956 |
cggcgctatcaatctcatgagaatgggatcaataatttcgtcagctgggaacctctc |
4923900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University