View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_14 (Length: 380)
Name: NF21521_low_14
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 32141410 - 32141252
Alignment:
| Q |
26 |
tacaatgaccctgttccacatactaacaacaactacgtggcaccaaacaccgttaatgttgccaacaaatcttttgacaatgcaactacaaaaagtgaaa |
125 |
Q |
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| T |
32141410 |
tacaatgaccctgttccacatactaacaacaactacgtggcaccaaacaccgttaatgttgccaacaaatcttttgacaatgcaactacaaaaagtgaaa |
32141311 |
T |
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| Q |
126 |
caattggagatcataattggtttcaggacattaagttgatgatcttctatagactgatt |
184 |
Q |
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| T |
32141310 |
caattggagatcataatttgtttcaggacattaagttgatgatcttctatggactgatt |
32141252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 32141204 - 32141071
Alignment:
| Q |
232 |
aacaggtgattgtatagccttgccaaaattgcaaatggtggaggattaatttgcatgtctataaataattagttagttagttatctgttgttagctcaat |
331 |
Q |
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| T |
32141204 |
aacaggtgattgtatagccttgccaaaattgcatatggtggaggactaatttgcatgtctataaata----gttagttagttatctgttgttagctcaat |
32141109 |
T |
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| Q |
332 |
aagctatctacaaatcatagcatttgtatttcatctca |
369 |
Q |
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| T |
32141108 |
aagctatctacaaatcatagcatttgtatttcatctca |
32141071 |
T |
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