View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_16 (Length: 311)
Name: NF21521_low_16
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 1346863 - 1346587
Alignment:
| Q |
20 |
catatttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttg |
119 |
Q |
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| T |
1346863 |
catatttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttg |
1346764 |
T |
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| Q |
120 |
ggagtggattagcagaatctttgtttggtttgtggtgtgttgttctgctaatatatcaacctgttcgtttgtctgctgtcaatttcatcttctgccgagg |
219 |
Q |
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| T |
1346763 |
ggagtggattagcagaatctttgtttggtttgtggtgtgttgttctgctaatagatcaacttgttcgtttgtctgctgtcaatttcatcttctgccgagg |
1346664 |
T |
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| Q |
220 |
gctttttgatgtcgtgtctgaccggaaatttgtgtttggccgttttaacttgcaattagcttttgttcttttctgtg |
296 |
Q |
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| T |
1346663 |
gctttttgatgtcgtgtctgaccggaaatttgtgtttggccgttttaacttgcaattagcttttgttcttttctgtg |
1346587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 19652988 - 19652915
Alignment:
| Q |
38 |
tttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaacaaagcttt |
111 |
Q |
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| T |
19652988 |
tttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaacaaagcttt |
19652915 |
T |
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