View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_18 (Length: 249)
Name: NF21521_low_18
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 35525625 - 35525860
Alignment:
| Q |
13 |
aatatgcagacaattcttctagctctatttcccgttaaacgtttcnnnnnnnnnagggggcagagcttcttttaaattaggagtatcaattaactaatta |
112 |
Q |
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| T |
35525625 |
aatatgcagacaattcttctagctctatttcccgttaaacgtttctttttttt-agggggcagagcttcttttaaattaggagtatcaattaactaatta |
35525723 |
T |
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| Q |
113 |
atcatatcacattggaccatgaataattagatagtatacaaaatgaattaatattgcattttaataagaaaattaagaaatcacaagagaaaggtaaacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35525724 |
atcatatcacattggaccatgaataattagatagtatacaaaatgaattaatattgcattttaataagaaaattaagaaatcacaagagaaaggtaaacc |
35525823 |
T |
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| Q |
213 |
ggtgaattatgtattcaaattccaaatgctattctct |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35525824 |
ggtgaattatgtattcaaattccaaatgctattctct |
35525860 |
T |
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