View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_19 (Length: 239)
Name: NF21521_low_19
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 660269 - 660458
Alignment:
| Q |
18 |
tatttgagttgtattttctccacatatattagcacgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctaccta |
117 |
Q |
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| T |
660269 |
tatttgagttgtattttctccacatatattagcatgaatccaagataaatgaaaaactagttcaagaaatctgagttgaaaccaaataacttcctaccta |
660368 |
T |
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| Q |
118 |
ggcatgaataatatacaaaatgcaagaaagag-----nnnnnnnntgttcattaatctaattagagatgtttggtcgtgagcttgccaac |
202 |
Q |
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| T |
660369 |
ggcatgaataatatacaaaatgcaagaaagagaaaaaaaaaaaaatgttcattaatctaattagagatgtttggtcgtgagcttgccaac |
660458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 22071108 - 22070977
Alignment:
| Q |
16 |
catatttgagttgtattttctccacatatattagcacgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctacc |
115 |
Q |
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| T |
22071108 |
catatttaagttgtattttctccacatatattagcatgaatccaagatcaattaaaaaccagtacagaaaatttgagttgaaatcaaataacttcctatc |
22071009 |
T |
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| Q |
116 |
taggcatgaataatatacaaaatgcaagaaagag |
149 |
Q |
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| T |
22071008 |
aagggtttaata--atacaaaatgcaagaaagag |
22070977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 22065148 - 22065017
Alignment:
| Q |
16 |
catatttgagttgtattttctccacatatattagcacgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctacc |
115 |
Q |
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| T |
22065148 |
catatttaagttgtattttctccacatatgtaaacatgaatccaagatcaactaaaaactagttcaagaaatttgagttgaaatcgaataatttccttac |
22065049 |
T |
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| Q |
116 |
taggcatgaataatatacaaaatgcaagaaagag |
149 |
Q |
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| T |
22065048 |
tatgcttaaata--ttacaaaatgcaagaaagag |
22065017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 22082405 - 22082314
Alignment:
| Q |
16 |
catatttgagttgtattttctccacatatattag----cacgaatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaa |
103 |
Q |
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| T |
22082405 |
catatttaagttgtattttctccacatatattagtatatatgaatcatagatcaattaaaaaccagtacaaaaaatttgagttgaaatcaaa |
22082314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 15963311 - 15963235
Alignment:
| Q |
54 |
aatccaagataaatgaaaaaccagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataata |
130 |
Q |
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|||||||||| ||| |||||| |||| |||||| |||| ||||||||||||||| | ||| ||||||| ||||||| |
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| T |
15963311 |
aatccaagatgaattaaaaacaagtttaagaaaactgaattgaaaccaaataaccttctatttaggcataaataata |
15963235 |
T |
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