View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21521_low_2 (Length: 641)

Name: NF21521_low_2
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21521_low_2
NF21521_low_2
[»] chr1 (1 HSPs)
chr1 (4-629)||(50530151-50530766)


Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 4 - 629
Target Start/End: Complemental strand, 50530766 - 50530151
Alignment:
Q  4 tgtataaagtaaggtagaaacttcataattaaaaaataaataaaatgaatgaattatggtaggaatatttatattannnnnnngaccaggggaatgaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  50530766 tgtataaagtaaggtagaaacttcataattaaaaaataaataaaatgaatgaattatggtaggaatatttatattatttttttgaccaggggaatgaata 50530667  T
Q  104 tttataaacgtaagagtatggtaaaataataaatagcattatccttagctatgatttgatactttactggttactagttcagtgaactaaaacagtgaaa 203  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50530666 tttataaacgtaacagtttggtaaaataataaatagcattatccttcgctatgatttgatactttactggttagtagttcagtgaactaaaacagtgaaa 50530567  T
Q  204 ctgttcacagcaatctttttgcactttgttgcnnnnnnnnnnnnnnnngggttataaaagctgtctttcaaacccatccataacgcacatcatcacacac 303  Q
    ||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530566 ctgttcacagcaatctttttgcactttgttgcagagaga----------ggttataaaagctgtctttcaaacccatccataacgcacatcatcacacac 50530477  T
Q  304 agaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgctaaaactccctctcgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530476 agaaaaacaaaaccaaagagcgcacgcaatgacaagccatggctcatcgttttcgagcctcccaaactatctccaagccgtcgctaaaactccctctcgc 50530377  T
Q  404 tttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgcgttcgagctaggtccggtaacagcatgcgcaaaaccctccgttggtttg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  50530376 tttgctcgtcgcggcttctccgtctccacttcttacgaagaaatgagccgtgttcgagctaggtccggcaacagcatgcgcaaaagcctccgttggtttg 50530277  T
Q  504 acttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggcccttccgttgttctatc 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50530276 acttagtcagctttggtatcggtggaatggtcggcgccggagtcttcgtcaccactggccacgctacccgtgttcacgctggcccttccgttgttctatc 50530177  T
Q  604 ttacgccattgccggtttctgtgctc 629  Q
    ||||||||||||||||||||||||||    
T  50530176 ttacgccattgccggtttctgtgctc 50530151  T

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