View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_5 (Length: 535)
Name: NF21521_low_5
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 533
Target Start/End: Original strand, 52832085 - 52832599
Alignment:
| Q |
20 |
ttttatatttccctttatatcttccagctgcaatttcaaataacacaaatcaacccaccnnnnnnnnn-tgtcaaatttaatgtaaaaaactataatttg |
118 |
Q |
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| T |
52832085 |
ttttatatttccctttatatcttccagctgcaatttcaaataacacaaatcaacccaccaaaaaaaaaatgtcaaatttaatgtaaaaaactataatttg |
52832184 |
T |
|
| Q |
119 |
tagcagatcttacagttttttgcaagcgggtaacctcttgttttaatctgaaaatatcctgttggtgttctctattgagtaactgacgatcatagacaaa |
218 |
Q |
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| T |
52832185 |
tagcagatcttacagttttttgcaagcgggtaacctcttgttttaatctgaaaatatcttgttggtgttctctactgagtaattgacgatcatagacaaa |
52832284 |
T |
|
| Q |
219 |
ccatgcaagagagattaaaaggaaaatgagaaatgcaaaacggttggggcggtttgcgtaataacgagtttgaaaatgacgcaatgcagatgaagatggt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||| || |||||||||||||||||||| | |
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| T |
52832285 |
ccatgcaagagagattaaaaggaaaatgagaaatgcaaaacgtttgggtctttttgcgtaataacgaggttgaacataacgcaatgcagatgaagatgat |
52832384 |
T |
|
| Q |
319 |
gaataatttttcctcgccattccgaaaatgtatgttactacaatgtggaggagttgggttctttaatttctgctacaagagaagggtgtataatcaatca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832385 |
gaataatttttcctcgccattccgaaaatgtatgttactacaatgtggaggagttgggttctttaatttctgctacaagagaagggtgtataatcaatca |
52832484 |
T |
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| Q |
419 |
taaatgggtgcaaaaagggaaaagaagtaacaagtgtggcgatgttacatgtgacctttgtttaacaatgtaaggaaagtggacaataaaattcggagtt |
518 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52832485 |
taaatgggtgcaaaaagggaaaagaagtaacaagggtggtggtgttacatgcgacctttgtttaacaatgtagggaaagtggacaataaaattcggagtt |
52832584 |
T |
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| Q |
519 |
tcctctgtttctgtg |
533 |
Q |
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||||||||||||||| |
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| T |
52832585 |
tcctctgtttctgtg |
52832599 |
T |
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