View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21521_low_6 (Length: 515)

Name: NF21521_low_6
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21521_low_6
NF21521_low_6
[»] chr5 (5 HSPs)
chr5 (29-96)||(30773302-30773368)
chr5 (179-238)||(30772697-30772756)
chr5 (244-300)||(30772611-30772667)
chr5 (29-64)||(27298596-27298631)
chr5 (468-503)||(30770820-30770855)
[»] chr6 (2 HSPs)
chr6 (170-235)||(16263911-16263976)
chr6 (168-235)||(16242095-16242162)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 30773368 - 30773302
Alignment:
Q  29 acaataatttttatttaaacgtgattttgcataaaatattattgattcctccttccatcaaaacccaa 96  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  30773368 acaataatttttatttaaacgtgattttgcataaaatatt-tttattcctccttccaccaaaacccaa 30773302  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 30772756 - 30772697
Alignment:
Q  179 agttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgatatt 238  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  30772756 agttggttatcattaaaggatgatttagtaattttattaatagaaaagaacaattatatt 30772697  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 30772667 - 30772611
Alignment:
Q  244 actcatcttttccattgaaaatttccaccggtcattatccatacactctcctctcta 300  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  30772667 actcatcttttccattgaaaatttccacctgtcatattccatacactctcctctcta 30772611  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 27298596 - 27298631
Alignment:
Q  29 acaataatttttatttaaacgtgattttgcataaaa 64  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27298596 acaataatttttatttaaatgtgattttgcataaaa 27298631  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 30770855 - 30770820
Alignment:
Q  468 gattagtgttgttatctatacctggcgctgattgtg 503  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30770855 gattagtgttgttatctatacctggtgctgattgtg 30770820  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 16263976 - 16263911
Alignment:
Q  170 acacttttaagttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgat 235  Q
    ||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||| ||||    
T  16263976 acacttttaagttagttattagtaaaggataatttagtaattttgttaatagaaaagaacattgat 16263911  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 16242162 - 16242095
Alignment:
Q  168 acacacttttaagttggttatcattaaaggatgagttagtaattttgttaatagaaaagaacaatgat 235  Q
    ||||||||||||||| || || | |||||  | | |||||||||||||||||||||||||||| ||||    
T  16242162 acacacttttaagttagtaattagtaaagattaatttagtaattttgttaatagaaaagaacattgat 16242095  T

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