View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21521_low_7 (Length: 500)
Name: NF21521_low_7
Description: NF21521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21521_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 46187498 - 46187964
Alignment:
| Q |
19 |
gttaagcggtcaatacctcctctcctctcacctaacctcacctgtccccgaaacaagtaaagatacgttggaaatattttttaccataccttttccttct |
118 |
Q |
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| T |
46187498 |
gttaagcggtcaatacctcctctcctctcacctaacctcacctgtccccgaaacaagtaaagatacgttggaaatattttttaccataccttttccttct |
46187597 |
T |
|
| Q |
119 |
cattgaatcactccattcatggttaagaattcaaacacaacttttgaaagtctctcttgtcagagatttcgtttttctcattagttgttattttccccat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46187598 |
cattgaatcactccattcatggttaagaattcaaacacaacttttgaaagtctctcttgtcagagatttcgattttctcattagttgttattttccccat |
46187697 |
T |
|
| Q |
219 |
ctatttatttat-tcataggcctagcttcttgagcataagcctcgaaactgagctgagcaccattattgccatagtaatggaagctacttccaagccaaa |
317 |
Q |
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||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187698 |
ctatttattcatatcatagacctagcttcttgagcataagcctcgaaactgagctgagcaccattattgccatagtaatggaagctacttccaagccaaa |
46187797 |
T |
|
| Q |
318 |
ccatgtctctatcttcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcctatggctttctagcataacacta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187798 |
ccatgtctctatcttcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcctatggctttctagcataacacta |
46187897 |
T |
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| Q |
418 |
gcaacatttgttgaagcattcttatttctccaaaactatgaaccaatgttccatgtttttctcctat |
484 |
Q |
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| T |
46187898 |
gcaacatttgttgaagcattcttatttctccaaaactatgaaccaatgttccatgtttttctcctat |
46187964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 32833393 - 32833231
Alignment:
| Q |
295 |
atggaagctacttccaagccaaaccatgtctctatcttcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcc |
394 |
Q |
| |
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||||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||| || |||||| ||||| ||||| | ||||| |||||| |
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| T |
32833393 |
atggaagctacatccaagcaaaaccatgaccct---gtcaatgaatgcaccaacttcactcttttttcaaaccatctcctttcaaaactctcatatttcc |
32833297 |
T |
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| Q |
395 |
tatggctttctagcataacactagcaacatttgttgaagcattcttatttctccaaaactatgaac |
460 |
Q |
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| T |
32833296 |
tatggctttgtagcatcacacttgcaacatttgctcaagctttcttacttcttcaaaactatgaac |
32833231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 295 - 460
Target Start/End: Complemental strand, 32846674 - 32846512
Alignment:
| Q |
295 |
atggaagctacttccaagccaaaccatgtctctatcttcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcc |
394 |
Q |
| |
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||||||||||| ||||||| |||||||| | || ||||||||||||||||||||||||| || |||||| ||||| ||||| | ||||| |||||| |
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| T |
32846674 |
atggaagctacatccaagcaaaaccatgaccct---gtcaatgaatgcaccaacttcactcttttttcaaaccatctcctttcaaaactctcatatttcc |
32846578 |
T |
|
| Q |
395 |
tatggctttctagcataacactagcaacatttgttgaagcattcttatttctccaaaactatgaac |
460 |
Q |
| |
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||||||||| |||||| ||||| |||||||||| | || | |||||| |||| ||||||||||||| |
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| T |
32846577 |
tatggctttgtagcatcacacttgcaacatttgctcaaactttcttacttcttcaaaactatgaac |
32846512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 485
Target Start/End: Original strand, 17931287 - 17931440
Alignment:
| Q |
332 |
tcaatgaatgcaccaacttcactctcttatcaaactatctcgtttcacacttctcacatttcctatggctttctagcataacactagcaacatttgttga |
431 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| ||||||||| |||| |||||| | ||| |||||||||| | | |
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| T |
17931287 |
tcaatgaatgcaccaacttcactctcttatcaaaccatctcctttcaaaactctcatatttcctattcctttgtagcatcatacttgcaacatttgctca |
17931386 |
T |
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| Q |
432 |
agcattcttatttctccaaaactatgaaccaatgttccatgtttttctcctatg |
485 |
Q |
| |
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||| |||| | |||| ||||||||||||| ||| |||||| |||| ||||||| |
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| T |
17931387 |
agctttctcacttcttcaaaactatgaactaatcttccattttttgttcctatg |
17931440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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