View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_high_1 (Length: 741)
Name: NF21522_high_1
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 158 - 378
Target Start/End: Complemental strand, 36685 - 36465
Alignment:
| Q |
158 |
gccaactagagttaataggggaacttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatggaccaat |
257 |
Q |
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| T |
36685 |
gccaactagagttaataggggaacttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatggaccaat |
36586 |
T |
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| Q |
258 |
agtaagaagaaaaagagattgaatgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgcaacaca |
357 |
Q |
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| T |
36585 |
agtaagaagaaaaagagattgaatgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgcaacaca |
36486 |
T |
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| Q |
358 |
aaggtgaagaaagagtcaatg |
378 |
Q |
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| T |
36485 |
aaggtgaagaaagagtcaatg |
36465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 441 - 724
Target Start/End: Complemental strand, 36402 - 36108
Alignment:
| Q |
441 |
tgtaatagtagaacttaagttctcatattctctcatactcatcatcatttaataatgacgattaaaaggtaaaaaacaatgcttccggtaatgattctaa |
540 |
Q |
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| T |
36402 |
tgtaatagtagaacgtaagttctcatattctctcatactcatcat---ttaataatgacgattaaaaggtaaaaaacaatgcttccggtaatgattctaa |
36306 |
T |
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| Q |
541 |
atctagtgaagtccgttttcaaccattatctatacttatca---------------taaatggtgtctggtaaaaaatgtggcaacagaaatagcaaaaa |
625 |
Q |
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| T |
36305 |
atctagtgaagtccgttt-caaccattatctatacttatcaccaattcatgattcataaatggtgtctggtaaaaaatgtggcaacagaaatagcaaaaa |
36207 |
T |
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| Q |
626 |
ctttcgtatatacttccagcacaaaacataaatagtacataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaac |
724 |
Q |
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| T |
36206 |
ctttcatatatacttccagcacaaaacataaatagtacataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaac |
36108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 36825 - 36720
Alignment:
| Q |
18 |
aggtactggctcacattgcaaaatacagctagcgagcatgaaagaagaatgcataactgtagaggttaaagaaaaaagattaactgagtaatctaacact |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825 |
aggtactggctcacattgcaaaatacagctagggagcatgaaagaagaatgcataactgtagaggttaaagaaaaaagattaactgagtaatctaacact |
36726 |
T |
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| Q |
118 |
attttt |
123 |
Q |
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|||||| |
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| T |
36725 |
attttt |
36720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 180 - 352
Target Start/End: Original strand, 8675665 - 8675837
Alignment:
| Q |
180 |
acttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatggaccaatagtaagaagaaaaagagattga |
279 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| | ||| |||| | |||| |||| |
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| T |
8675665 |
acttacaatggcaccagaagacatcttaaagttggttatcaacttgccactgagatagtaatcaacaaatggaccaagaataataagagagagagcttga |
8675764 |
T |
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| Q |
280 |
atgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgca |
352 |
Q |
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|| |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
8675765 |
ataggagcagtcttactcagcagttcaaaagatccaatcgaatatttcttttgcagagaaccgattgactgca |
8675837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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