View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21522_high_17 (Length: 269)

Name: NF21522_high_17
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21522_high_17
NF21522_high_17
[»] chr3 (13 HSPs)
chr3 (69-119)||(22894005-22894055)
chr3 (69-119)||(11512389-11512439)
chr3 (69-119)||(29081705-29081755)
chr3 (79-130)||(22894005-22894056)
chr3 (60-101)||(20286888-20286929)
chr3 (75-116)||(20287013-20287053)
chr3 (66-119)||(31342006-31342059)
chr3 (75-116)||(31342116-31342156)
chr3 (75-116)||(32385366-32385407)
chr3 (74-119)||(48342794-48342839)
chr3 (79-119)||(28309087-28309127)
chr3 (69-101)||(48342210-48342242)
chr3 (69-101)||(49159511-49159543)
[»] scaffold1315 (1 HSPs)
scaffold1315 (74-119)||(1820-1865)
[»] scaffold1293 (1 HSPs)
scaffold1293 (74-119)||(206-251)
[»] chr6 (5 HSPs)
chr6 (74-119)||(16193835-16193880)
chr6 (74-119)||(369525-369570)
chr6 (74-119)||(2543849-2543894)
chr6 (101-130)||(369439-369468)
chr6 (74-118)||(28581739-28581783)
[»] chr1 (8 HSPs)
chr1 (74-119)||(10449455-10449500)
chr1 (69-119)||(28739419-28739469)
chr1 (66-119)||(45085927-45085979)
chr1 (64-119)||(44938792-44938847)
chr1 (74-116)||(15928081-15928122)
chr1 (101-130)||(6539696-6539725)
chr1 (78-119)||(50754735-50754776)
chr1 (83-119)||(28810066-28810102)
[»] chr5 (6 HSPs)
chr5 (59-119)||(896261-896321)
chr5 (79-119)||(12605661-12605701)
chr5 (74-119)||(5215676-5215721)
chr5 (82-119)||(42772071-42772108)
chr5 (69-101)||(19417438-19417470)
chr5 (69-101)||(29385418-29385450)
[»] chr2 (5 HSPs)
chr2 (59-119)||(7755328-7755388)
chr2 (74-113)||(13421801-13421840)
chr2 (66-115)||(5095749-5095798)
chr2 (75-119)||(15562212-15562256)
chr2 (69-101)||(39819056-39819088)
[»] chr4 (8 HSPs)
chr4 (76-119)||(30023651-30023694)
chr4 (78-119)||(53261101-53261142)
chr4 (75-119)||(54223561-54223605)
chr4 (79-129)||(11392303-11392353)
chr4 (81-119)||(46321359-46321397)
chr4 (74-115)||(42756296-42756337)
chr4 (69-121)||(30023485-30023537)
chr4 (69-101)||(31846924-31846956)
[»] chr7 (3 HSPs)
chr7 (69-119)||(7211862-7211912)
chr7 (69-119)||(17272701-17272751)
chr7 (68-119)||(32315708-32315759)
[»] chr8 (1 HSPs)
chr8 (75-114)||(33763466-33763505)


Alignment Details
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 22894055 - 22894005
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  22894055 tagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcac 22894005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 11512389 - 11512439
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  11512389 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 11512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 29081755 - 29081705
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||| ||||||||||||||||||  ||||||||||||||||    
T  29081755 tagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcac 29081705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 22894005 - 22894056
Alignment:
Q  79 gtgacattgtggttggtgacattcatcaaccacaatgtcacccaagtgctac 130  Q
    ||||||||||||||||| |   ||| ||||||||||||||||||||||||||    
T  22894005 gtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtgctac 22894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 20286888 - 20286929
Alignment:
Q  60 aacaacggatagcgcttgggtgacattgtggttggtgacatt 101  Q
    ||||||||||| | ||||||||||||| ||||||||||||||    
T  20286888 aacaacggatatcacttgggtgacattatggttggtgacatt 20286929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 20287053 - 20287013
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 116  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  20287053 ttgggtgacattgtggttggtgacatt-accaaccacaatgt 20287013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 31342006 - 31342059
Alignment:
Q  66 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||  |||| ||||||||||||||||||||||   |||||||||||||||    
T  31342006 ggatagcatttggatgacattgtggttggtgacattggccaaccacaatgtcac 31342059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 31342156 - 31342116
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 116  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  31342156 ttgggtgacattgtggttggtgacatt-accaaccacaatgt 31342116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaatgt 116  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 48342794 - 48342839
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||| ||||||| ||||||  ||||||||||||||||    
T  48342794 cttgggtgacattatggttggcgacattggtcaaccacaatgtcac 48342839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 28309087 - 28309127
Alignment:
Q  79 gtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||| ||||||| |||||||||||| ||||    
T  28309087 gtgacattgtggttgatgacattgatcaaccacaatatcac 28309127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 48342210 - 48342242
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  48342210 tagcacttgggtgacattgtggttggtgacatt 48342242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 49159543 - 49159511
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  49159543 tagcacttgggtgacattgtggttggtgacatt 49159511  T

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Target: scaffold1315 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 1820 - 1865
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  1820 cttgggtgacattgtggttggtgacattgatcaaccacaatatcac 1865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 251 - 206
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  251 cttgggtgacattgtggttggtgacattgatcaaccacaatatcac 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 16193880 - 16193835
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  16193880 cttgggtgacattgtggttggtgacattggtcaaccacaatgtcac 16193835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 369570 - 369525
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||    
T  369570 cttgagtgacattgtggttggtgacattgaccaaccacaatgtcac 369525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 2543894 - 2543849
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||||||||||||||||   |||||||||||||||    
T  2543894 cttgggtgacattgtggttggtgacattggccaaccacaatgtcac 2543849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 369468 - 369439
Alignment:
Q  101 tcatcaaccacaatgtcacccaagtgctac 130  Q
    ||||||||||||||||||||||||||||||    
T  369468 tcatcaaccacaatgtcacccaagtgctac 369439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 28581739 - 28581783
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtca 118  Q
    ||||| ||||||||||||||||||||||   ||||||||||||||    
T  28581739 cttggctgacattgtggttggtgacattggccaaccacaatgtca 28581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10449455 - 10449500
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  10449455 cttgggtgacattgtggttggtgacattgaccaaccacaatgtcac 10449500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 28739469 - 28739419
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  28739469 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 28739419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 45085927 - 45085979
Alignment:
Q  66 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||| ||||  |||||||||||||||||||||||| |||||||||||||||    
T  45085927 ggatagcacttgattgacattgtggttggtgacattca-caaccacaatgtcac 45085979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 44938792 - 44938847
Alignment:
Q  64 acggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||| | ||||||||||||||||||| |||||||| | |||||| ||||||||    
T  44938792 acggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcac 44938847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 15928081 - 15928122
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgt 116  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  15928081 cttgggtgacattgtgattggtgacatt-atcaaccacaatgt 15928122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 6539696 - 6539725
Alignment:
Q  101 tcatcaaccacaatgtcacccaagtgctac 130  Q
    ||||||||||||||||||||||||||||||    
T  6539696 tcatcaaccacaatgtcacccaagtgctac 6539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 50754735 - 50754776
Alignment:
Q  78 ggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  50754735 ggtgacattgtggttggtgacattggccaaccacaatgtcac 50754776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 28810102 - 28810066
Alignment:
Q  83 cattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||  ||||||||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcac 28810066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 896261 - 896321
Alignment:
Q  59 taacaacggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||| |||||| | ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  896261 taacatcggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcac 896321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 12605701 - 12605661
Alignment:
Q  79 gtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcac 12605661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 5215721 - 5215676
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||| |||||||  ||||||||||| ||||    
T  5215721 cttgggtgacattgtggttgatgacattggtcaaccacaatatcac 5215676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 42772108 - 42772071
Alignment:
Q  82 acattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcac 42772071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 19417438 - 19417470
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  19417438 tagcacttgggtgacattgtggttggtgacatt 19417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 29385450 - 29385418
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  29385450 tagcacttgggtgacattgtggttggtgacatt 29385418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 7755328 - 7755388
Alignment:
Q  59 taacaacggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| |||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  7755328 taactacgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 7755388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 13421840 - 13421801
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaa 113  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  13421840 cttgggtgacattgtggttggtgacattgaccaaccacaa 13421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 5095749 - 5095798
Alignment:
Q  66 ggatagcgcttgggtgacattgtggttggtgacattcatcaaccacaatg 115  Q
    ||||||| ||||||||| ||||||||||||||||||   |||||||||||    
T  5095749 ggatagcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 15562212 - 15562256
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||||||| |||||||   |||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcac 15562256  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 39819056 - 39819088
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  39819056 tagcacttgggtgacattgtggttggtgacatt 39819088  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 30023694 - 30023651
Alignment:
Q  76 tgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcac 30023651  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 53261101 - 53261142
Alignment:
Q  78 ggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  53261101 ggtgacattgtggttggtgacattgaccaaccacaatgtcac 53261142  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 54223561 - 54223605
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| |||||||||||||||||||||| | |||||||||||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcac 54223605  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 11392353 - 11392303
Alignment:
Q  79 gtgacattgtggttggtgacattcatcaaccacaatgtcacccaagtgcta 129  Q
    ||||||||||||| ||  |  ||||||||||||||||||||||||||||||    
T  11392353 gtgacattgtggtaggccaatttcatcaaccacaatgtcacccaagtgcta 11392303  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 46321359 - 46321397
Alignment:
Q  81 gacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  46321359 gacattgtggttggtgacattgatcgaccacaatgtcac 46321397  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 42756337 - 42756296
Alignment:
Q  74 cttgggtgacattgtggttggtgacattcatcaaccacaatg 115  Q
    |||| |||||||||||||||||||| || |||||||||||||    
T  42756337 cttgagtgacattgtggttggtgactttgatcaaccacaatg 42756296  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 30023485 - 30023537
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcaccc 121  Q
    |||| ||| ||||| ||||||||||||||||||  ||||||| ||||||||||    
T  30023485 tagcacttaggtgatattgtggttggtgacattggtcaaccataatgtcaccc 30023537  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 31846956 - 31846924
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacatt 101  Q
    |||| ||||||||||||||||||||||||||||    
T  31846956 tagcacttgggtgacattgtggttggtgacatt 31846924  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 7211862 - 7211912
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  7211862 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 7211912  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 17272701 - 17272751
Alignment:
Q  69 tagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  17272701 tagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcac 17272751  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 32315708 - 32315759
Alignment:
Q  68 atagcgcttgggtgacattgtggttggtgacattcatcaaccacaatgtcac 119  Q
    ||||| |||| |||||||||||||||||||||||   |||||||||||||||    
T  32315708 atagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcac 32315759  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  75 ttgggtgacattgtggttggtgacattcatcaaccacaat 114  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

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