View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_high_3 (Length: 633)
Name: NF21522_high_3
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Original strand, 6067986 - 6068522
Alignment:
| Q |
9 |
gatatgaagctctacaacgacgaaagcgataaccagagtcaaaggatcctattccaaagcatagctcctactagagagagaactctcctaaccacaacta |
108 |
Q |
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| T |
6067986 |
gatatgaagctctacaacgacgaaagcgataaccagagtcaaaggatcctattccaaagcataactcctactagagagagaactctcctaaccacaacta |
6068085 |
T |
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| Q |
109 |
tcaaccataaaactgaatgattcccacactcctcttgttgaatcatataaaggctaaatgactaagatccccctccctaaaatgcggtaaccatattcta |
208 |
Q |
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| T |
6068086 |
tcaaccataaaactgaatgattcccacactcctcttgttgaatcatataaaggctaaatgactaagatccccctccctaaaatgcggtaaccatattcta |
6068185 |
T |
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| Q |
209 |
gctcactaactagttctcccttgatcccacgccatttcttatagaatatgcataggtgtcctatgactctgattccgtgcttccattgacagaatggaat |
308 |
Q |
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| T |
6068186 |
gctcactaactagttctcccttgatcccacaccatttcttatagaatatgcataggtgtcctatgactctgattccgtgcttccattgacagaaaggaat |
6068285 |
T |
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| Q |
309 |
ccaggtcacacgcagtggtagtctg--gtagatttcatttgtcgagcatttcttggtgcattttggaataatctatcaatatcagaagccaaagtagtaa |
406 |
Q |
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| T |
6068286 |
ccaggtcacacgcagtggtagtctggtgtagatttcatttgtcgagcatttcttggcgcattttggaataatctatcaatatcagaagccaaagtagtaa |
6068385 |
T |
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| Q |
407 |
aggagatagtatgacttggtagtcaaatttgttttacaagaatgacttgcggattgttactggagtatgaagccacattagtaaaggagatgcatgaatt |
506 |
Q |
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| T |
6068386 |
aggagatagtatgacttgctagtcaaatttgttttacaagaatgacttgcggattgttactggagtatgaagccacattagtaaaggagatgcatgaatt |
6068485 |
T |
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| Q |
507 |
gaatggcaaccttctgcaaaaatactagtgcatccag |
543 |
Q |
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| T |
6068486 |
gaatggcaaccttcttcaaaaatactagtgcatccag |
6068522 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 48625360 - 48625264
Alignment:
| Q |
171 |
taagatccccctccctaaa-atgcggtaaccatattctagctcactaact--agttctcccttgatcccacgccatttcttatagaatatgcatagg |
264 |
Q |
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| T |
48625360 |
taagattcccctccctacagatgcggtaaccatattctagctcactaaataaattactctcttgaccccactctatttcttctagaatatgcctagg |
48625264 |
T |
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