View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21522_low_13 (Length: 366)

Name: NF21522_low_13
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21522_low_13
NF21522_low_13
[»] chr2 (1 HSPs)
chr2 (13-349)||(12916939-12917275)
[»] chr4 (2 HSPs)
chr4 (62-164)||(42359313-42359415)
chr4 (32-64)||(32698086-32698118)
[»] chr1 (4 HSPs)
chr1 (62-154)||(11710553-11710645)
chr1 (81-154)||(24611103-24611176)
chr1 (102-154)||(48594055-48594107)
chr1 (102-154)||(48598666-48598718)
[»] chr7 (4 HSPs)
chr7 (47-154)||(31848094-31848203)
chr7 (32-65)||(5610249-5610282)
chr7 (62-154)||(32197875-32197968)
chr7 (106-154)||(41693645-41693693)
[»] chr6 (1 HSPs)
chr6 (47-154)||(21953206-21953316)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 12917275 - 12916939
Alignment:
Q  13 aatatgccaaatcattcagaaagtggacccaataactattttaaaaaataaattttgccgggacgtttttcaaaagtttatttttacatggatcaaaacc 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  12917275 aatatgccaaatcattcaaaaagtggacccaataactattttaaaaaacaaattttgccgagacatttttcaaaagtttatttttacatagatcaaaacc 12917176  T
Q  113 catattcgtcgtatttacagggatcaacaacatattttagccaaaaataaattgcttgacacctatcataaatctaacataaacttctaaaatgtttaaa 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12917175 catattcgttgtatttacagggatcaacaacatattttagccaaaaataaattgcttgacacctatcataaatcaaacataaacttctaaaatgtttaaa 12917076  T
Q  213 tttggtagcaaaattttgttcgtgcacaatgagtgaacttcaaagttcatcaactgtgattgtatcaatttccttagattcttcaatcgacacaactaca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12917075 tttggtagcaaaattttgttcgtgcacaatgagtgaacttcaaagttcatcaactgtgattgcatcaatttccttagattcttcaatcgacacaactaca 12916976  T
Q  313 tcagcaaatatttctattagagttctaaggatattat 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  12916975 tcagcaaatatttctattagagttctaaggatattat 12916939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 42359313 - 42359415
Alignment:
Q  62 aaattttgccgggacgtttttcaaaagtttatttttacatggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagccaaaaata 161  Q
    ||||||||| |||||||||||||||||||| ||||  || ||| ||||| ||| | |||   ||||| |||||| ||| ||||||||||||||||||| |    
T  42359313 aaattttgcagggacgtttttcaaaagttttttttaccagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatattttagccaaaaaaa 42359412  T
Q  162 aat 164  Q
    |||    
T  42359413 aat 42359415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 32698118 - 32698086
Alignment:
Q  32 aaagtggacccaataactattttaaaaaataaa 64  Q
    |||||||||||||| ||||||||||||||||||    
T  32698118 aaagtggacccaatgactattttaaaaaataaa 32698086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 11710645 - 11710553
Alignment:
Q  62 aaattttgccgggacgtttttcaaaagtttatttttacatggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||||| ||| ||| |||||||||||| ||||  || ||| |||||||||   ||||  |||||||||||||||| ||||||||||||||    
T  11710645 aaattttgcaggggcgtatttcaaaagttttttttaccagggaccaaaacccaacctcgttatatttacagggatcaaaaacatattttagcc 11710553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 24611103 - 24611176
Alignment:
Q  81 ttcaaaagtttatttttacatggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||| ||||||||  || ||| |||||| || | ||||| |||||||||||| ||| ||||||||||||||    
T  24611103 ttcaaaattttattttaccagggaccaaaactcaaactcgtcatatttacagggaccaaaaacatattttagcc 24611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 48594055 - 48594107
Alignment:
Q  102 ggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||||||||| | ||| | |||||||||||| ||| ||||||||||||||    
T  48594055 ggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcc 48594107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 48598666 - 48598718
Alignment:
Q  102 ggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||||||||| | ||| | |||||||||||| ||| ||||||||||||||    
T  48598666 ggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcc 48598718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 31848094 - 31848203
Alignment:
Q  47 actattttaaaaaataaa---ttttgccgggacgtttttcaaaagtttatttttacatggatcaaaacccatattcgtcgtatttacagggatcaacaac 143  Q
    ||||||||||||||||||   |||||| || ||||||||||||||||| ||||  || ||| ||||||||| |||||   ||||| ||||||  || |||    
T  31848094 actattttaaaaaataaaaaattttgcagg-acgtttttcaaaagttttttttaccagggaccaaaacccaaattcgctatatttgcagggactaaaaac 31848192  T
Q  144 atattttagcc 154  Q
    |||||||||||    
T  31848193 atattttagcc 31848203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 5610282 - 5610249
Alignment:
Q  32 aaagtggacccaataactattttaaaaaataaat 65  Q
    ||||||||||||| ||||||||||||||||||||    
T  5610282 aaagtggacccaagaactattttaaaaaataaat 5610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 32197875 - 32197968
Alignment:
Q  62 aaattttgccgggacgtttttcaaaagtttatttttac-atggatcaaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||||| |||||| ||||||||| ||| ||||||| | ||| ||||||||| |||||   ||||| |||||| ||| | ||||||||||||    
T  32197875 aaattttgcagggacgcttttcaaaattttttttttaccaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatattttagcc 32197968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 41693693 - 41693645
Alignment:
Q  106 caaaacccatattcgtcgtatttacagggatcaacaacatattttagcc 154  Q
    ||||||||| ||||| | ||||| |||||||||| ||||||||||||||    
T  41693693 caaaacccaaattcgccatatttgcagggatcaaaaacatattttagcc 41693645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 21953316 - 21953206
Alignment:
Q  47 actattttaaaaaataaa---ttttgccgggacgtttttcaaaagtttatttttacatggatcaaaacccatattcgtcgtatttacagggatcaacaac 143  Q
    ||||||||||||||||||   |||||| |||||||||||||||  ||| ||||  || ||| ||||| ||| |||||   ||||| |||||| ||| | |    
T  21953316 actattttaaaaaataaaaaattttgcagggacgtttttcaaattttttttttaccagggaccaaaatccaaattcgctatatttgcagggaccaaaagc 21953217  T
Q  144 atattttagcc 154  Q
    |||||||||||    
T  21953216 atattttagcc 21953206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University