View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21522_low_14 (Length: 343)
Name: NF21522_low_14
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 1665411 - 1665088
Alignment:
| Q |
16 |
caatatcatggtaaccattttcttccttagtttttgcttaggtcttatgaactaagaaaaaacatatttaaccttaattttatga---------gtttca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1665411 |
caatatcatggtaaccattttcttccttagtttttgcttagttcttatgaactaagaaaaaacatatttaaccttaattttatgaacttcgtatgtttca |
1665312 |
T |
|
| Q |
107 |
cttagtttttgcttacccattttctaacaatttctaagtttgacggtgtcgacggatttatgaatggcacttgttttagtagtttacatctatttcttta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665311 |
cttagtttttgcttacccattttctaacaatttctaagtttgacagtgtcgacggatttatgaatggcacttgttttagtagtttacatctatttcttta |
1665212 |
T |
|
| Q |
207 |
ttgtttgttagttgaggtgctctatattggtcaattcattgcccattgttgaagtgatttgcagagctcatacatgtagaacaacattattttgggagac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1665211 |
ttgtttgttagttgaggtgctctatattggtcaattcattgcccattgttgaagtgatttgcagagctcatacatgtagaacaacattattttgggagac |
1665112 |
T |
|
| Q |
307 |
atgcattcatattctggtatatat |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1665111 |
atgcattcatattctggtatatat |
1665088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University