View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21522_low_19 (Length: 240)

Name: NF21522_low_19
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21522_low_19
NF21522_low_19
[»] chr3 (8 HSPs)
chr3 (1-240)||(23035952-23036191)
chr3 (14-240)||(23038836-23039062)
chr3 (1-240)||(23148540-23148779)
chr3 (1-240)||(23016844-23017083)
chr3 (1-240)||(23145702-23145941)
chr3 (56-240)||(23032551-23032735)
chr3 (13-240)||(23139840-23140067)
chr3 (34-238)||(23024087-23024291)
[»] scaffold0554 (1 HSPs)
scaffold0554 (32-240)||(6733-6941)
[»] chr6 (1 HSPs)
chr6 (69-240)||(21779663-21779834)
[»] scaffold0059 (1 HSPs)
scaffold0059 (85-240)||(62019-62174)
[»] chr1 (3 HSPs)
chr1 (63-240)||(12609749-12609926)
chr1 (87-240)||(12636869-12637022)
chr1 (63-240)||(15885941-15886118)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23035952 - 23036191
Alignment:
Q  1 tttcttcttatgaagctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagt 100  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23035952 tttcgtcttatgaagctcatatgacatgcagaggatgataaacagaagaaaacaataaaagttcatcctttcttctcattgtggctccaaattcgtcagt 23036051  T
Q  101 catgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtg 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23036052 catgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtg 23036151  T
Q  201 ctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  23036152 ctccctgggcatattcttcttccggcaccaaaaggaatgt 23036191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 23038836 - 23039062
Alignment:
Q  14 agctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattct 113  Q
    ||||||||| || | || ||||||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||| ||||| |||    
T  23038836 agctcatatgacttacaaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtct 23038935  T
Q  114 tcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcata 213  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  23038936 tcacttctgattccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcata 23039035  T
Q  214 ttcttcttccggaaccaaaaggaatgt 240  Q
    |||||||||||| ||||||||||||||    
T  23039036 ttcttcttccggcaccaaaaggaatgt 23039062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23148540 - 23148779
Alignment:
Q  1 tttcttcttatgaagctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagt 100  Q
    ||||||||  |||||||||| | || |||| ||||||||||||| ||||  |||||||||| ||||| ||||| ||||  |||  ||||||||| |||||    
T  23148540 tttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatcttttctcctcaccgtgagtccaaattcctcagt 23148639  T
Q  101 catgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtg 200  Q
    ||| |||| |||||||| | | |||||||| |||||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||||||| ||    
T  23148640 catatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaatatg 23148739  T
Q  201 ctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  23148740 ctccctgggcatattcttcttccggcaccaaaaggaatgt 23148779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23016844 - 23017083
Alignment:
Q  1 tttcttcttatgaagctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagt 100  Q
    ||||||||| |||||||||| | |||| || ||||||||||||| |||| || | |||||| ||||| ||||| ||||| ||| |||||||||  |||||    
T  23016844 tttcttcttctgaagctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaattgctcagt 23016943  T
Q  101 catgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtg 200  Q
    |||||||| ||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||     
T  23016944 catgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgta 23017043  T
Q  201 ctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    ||||| |||||||||||||||||   ||||||||||||||    
T  23017044 ctcccagggcatattcttcttccaccaccaaaaggaatgt 23017083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23145702 - 23145941
Alignment:
Q  1 tttcttcttatgaagctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagt 100  Q
    ||||||||  |||||||||| |  | |||| ||||| ||||||| ||||  |||||||||| ||||| ||||||||||  |||  ||||||||| |||||    
T  23145702 tttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaagatcatcttttcttctcaccgtgagtccaaattcctcagt 23145801  T
Q  101 catgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtg 200  Q
    ||| |||| |||||||| | | ||||||||||||||||||||||||||||||||||| ||||| |||||| |||  ||||||||| ||||||||||||||    
T  23145802 catatccatttcttcacctgttattccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtg 23145901  T
Q  201 ctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    |||||||| |||||||||||||| | ||||||||||||||    
T  23145902 ctccctggacatattcttcttccagcaccaaaaggaatgt 23145941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 23032551 - 23032735
Alignment:
Q  56 taaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatac 155  Q
    |||||| ||||| ||||||||||| | |  ||||||||| ||||||||||| | |||| ||||| ||||||||  ||||||| |||||||||||||||||    
T  23032551 taaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatac 23032650  T
Q  156 aacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  23032651 aacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaaagggaatgt 23032735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 23139840 - 23140067
Alignment:
Q  13 aagctcatattacatgcagaggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattc 112  Q
    ||||||| || ||| ||| ||||||| ||||| |||| ||||||||||| ||||| ||||||||||  | | |||||||||| || ||||| ||||||||    
T  23139840 aagctcacatgacaggcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattc 23139939  T
Q  113 ttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcat 212  Q
    ||||||| | |||||||| ||||||||||| ||||||| | |||||||  | ||||||| ||  |||| |||||||||||||||| |||| |||||||||    
T  23139940 ttcacttctaattccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcat 23140039  T
Q  213 attcttcttccggaaccaaaaggaatgt 240  Q
    ||||||| ||| | ||||||||||||||    
T  23140040 attcttcgtcccgcaccaaaaggaatgt 23140067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 23024087 - 23024291
Alignment:
Q  34 gatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactagg 133  Q
    |||||||||||||||| |||||||| || ||||| ||||| | ||  |||   |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  23024087 gatgataaacagaaggtaacaataatagatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttgattccattagg 23024186  T
Q  134 aagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaa 233  Q
    ||||||||| |||||||| ||||||||| | |||||||| |  |||| | ||| |||||||||| |||||||||| |||||||||| ||| | |||||||    
T  23024187 aagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtcccgcaccaaaa 23024286  T
Q  234 ggaat 238  Q
    |||||    
T  23024287 ggaat 23024291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 6941 - 6733
Alignment:
Q  32 aggatgataaacagaaggaaacaataaaagttcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccacta 131  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||| ||  |||||||||| || |||||||||||||||||||||||||||||||      
T  6941 aggatgataaacagagggaaacaatgaaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacat 6842  T
Q  132 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaa 231  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||| | || |||||||| ||||||||||| | |||||    
T  6841 ggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaa 6742  T
Q  232 aaggaatgt 240  Q
    |||||||||    
T  6741 aaggaatgt 6733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 21779663 - 21779834
Alignment:
Q  69 tttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaa 168  Q
    |||||| |||| ||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  21779663 tttcttttcattgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgcaa 21779762  T
Q  169 gggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  21779763 gggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaaatggaatgt 21779834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 62019 - 62174
Alignment:
Q  85 ctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatt 184  Q
    |||||||||  |||||||||||||| ||||||| ||| |||||| | ||||||||||| ||||| |||||||||||||| ||||| ||||  |||| | |    
T  62019 ctccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaacattgcaagtgccagctcaagact 62118  T
Q  185 tctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
      ||||||||||| | || ||||||||||||||| |||| | ||||||||||||||    
T  62119 catcaaaccaaatttactgcctgggcatattctttttccagcaccaaaaggaatgt 62174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 12609749 - 12609926
Alignment:
Q  63 tcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaaca 162  Q
    ||||| |||||| | | ||| ||||||||||  ||||||||||| || || |||| ||| |||||| | ||||||||||| ||||| |||||||||| ||    
T  12609749 tcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatca 12609848  T
Q  163 tcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
      ||||| ||||  |||| |||| |||||||||||||||| ||||| |||||||||||||| | |||||| |||||||    
T  12609849 atgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgt 12609926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 12636869 - 12637022
Alignment:
Q  87 ccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttc 186  Q
    |||||||  |||||||||||||| || |||| ||| |||||| | |||||| |||| ||||| ||||| |||||||  ||||| ||||  |||| ||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  187 tcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||||||||    
T  12636969 tcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgt 12637022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 240
Target Start/End: Complemental strand, 15886118 - 15885941
Alignment:
Q  63 tcatcctttcttctcatggtggctccaaattcgtcagtcatgtccaattcttcacttttgattccactaggaagcttccagtcaaaatgatacaacaaca 162  Q
    ||||| |||||| | | ||| ||||||||||  || |||||||| || || |||| |||  |||||   |||||| |||| ||||| |||||||||||||    
T  15886118 tcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcgggaagcctccaatcaaagtgatacaacaaca 15886019  T
Q  163 tcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggaaccaaaaggaatgt 240  Q
      ||||| ||||  |||| ||||  ||||||||||||  | || ||||||||||||||||| ||||||||||||||||    
T  15886018 atgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaaggaatgt 15885941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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