View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_low_2 (Length: 653)
Name: NF21522_low_2
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 644
Target Start/End: Original strand, 25990144 - 25990784
Alignment:
| Q |
13 |
attacagcaaaatccatcaaactcttgtcataagatacttgcagcccaagaaacaatgaagtaaactgaacattttagtgactcaat------------t |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
25990144 |
attacagcaaaatccatcaaactcttctcataagatacttgcagcccaagaaacaatgaagtaaactgaacattttagtgattcaatgtatgtttcaatt |
25990243 |
T |
|
| Q |
101 |
ggcagtgagattgacaaagataagtacggttcaatcgaatcacggtgtcaatttaacttcatcaaaaccatcgcaatttcaaacattaactaatttcact |
200 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990244 |
ggcagtgagattgacaaagataa---cggttcaatcaaatcacggtgtcaatttaacttcatcaaaaccatcgcaatttcaaacattaactaatttcact |
25990340 |
T |
|
| Q |
201 |
tgaattagtcaaacacagttctatctaccataatgttcatcagtgatcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctca |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990341 |
tggattagtcaaacacagttctatctaccataatgttcatcagtgatcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctca |
25990440 |
T |
|
| Q |
301 |
gactcacgatcaccagcgccatttccctcggtctccaagcatacaacacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
25990441 |
gactcacgatcaccagcgccatttccctcggtctccaagcatacaacacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaa |
25990540 |
T |
|
| Q |
401 |
aggatagattctgttcttcaagatgtgcgatttgcaaatcttgttcatcaactctattctctaaactatattcatcacctgaacttggatatatcatctc |
500 |
Q |
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| T |
25990541 |
aggatagattctgttcttcaagatgtgtgatttgcaaatcttgctcatcaactctattctctaaactatgttcatcacctgaacttggatatatcatctc |
25990640 |
T |
|
| Q |
501 |
aaacctgctcaaatcattgttcaatctcttctcaacctccaaaaccccaccgccattgttttcgccggagttttcctttcctgacctgagacggattagg |
600 |
Q |
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| T |
25990641 |
aaacctgctcaaatcattgttcaatctcttctcaacctccaaaaccccaccgccattgttttcgccggagttttcctttcctgacctgagacggattaga |
25990740 |
T |
|
| Q |
601 |
cctttcattgtgccatatccgtcaactccccacttttcctttgc |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990741 |
cctttcattgtgccatatccgtcaactccccacttttcctttgc |
25990784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 247 - 536
Target Start/End: Original strand, 25968318 - 25968611
Alignment:
| Q |
247 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctc-ggtctccaagcataca |
345 |
Q |
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||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||| ||||| | |||||| ||||||||| |
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| T |
25968318 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagcgccaattccccccggtctcaaagcataca |
25968417 |
T |
|
| Q |
346 |
acacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttgaaggatagattctgttcttcaagatgtgcgatttgcaaatcttgtt |
445 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||| |||| |||||| |||| |
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| T |
25968418 |
acacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgtt |
25968517 |
T |
|
| Q |
446 |
catcaactctattctctaaactatattcatcacctgaac---ttggatatatcatctcaaacctgctcaaatcattgttcaatctcttctcaac |
536 |
Q |
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||||||| |||||||| ||| ||| || |||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
25968518 |
catcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctacttaaatcattgttcaatctcttctcaac |
25968611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 641
Target Start/End: Original strand, 25968669 - 25968722
Alignment:
| Q |
588 |
gagacggattaggcctttcattgtgccatatccgtcaactccccacttttcctt |
641 |
Q |
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||||||||||||||||||||| ||||||||| | || | ||||||||||||||| |
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| T |
25968669 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttcctt |
25968722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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