View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_low_20 (Length: 236)
Name: NF21522_low_20
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8142325 - 8142512
Alignment:
| Q |
1 |
agccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagactctgg |
100 |
Q |
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| T |
8142325 |
agccatacatagtcactgtgagttaaggtat---gattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagactctgg |
8142421 |
T |
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| Q |
101 |
cccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgttacttgaatctataggcatatgt |
191 |
Q |
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| T |
8142422 |
cccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgtaacttgaatctataggcatatgt |
8142512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 7498299 - 7498166
Alignment:
| Q |
58 |
tttatttatattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctat |
157 |
Q |
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| T |
7498299 |
tttatttatattcattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctat |
7498200 |
T |
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| Q |
158 |
gacaaatctgttacttgaatctataggcatatgt |
191 |
Q |
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| T |
7498199 |
gacaaatctgtaactttaatctataggtatatgt |
7498166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7501141 - 7500953
Alignment:
| Q |
1 |
agccatacatagtcactgtgagttaaggtattatgattggctaagaagtgtgcctcatttatttatattcattttgcatcaaatcgacacaagactctgg |
100 |
Q |
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||||||||||||||| |||||||||||| || | |||||||||| |||||||||||||||| |||| |||||||||||||||| ||||| |||||| |
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| T |
7501141 |
agccatacatagtcattgtgagttaaggcat---gcttggctaagatatgtgcctcatttatttgtattaattttgcatcaaatcgtcacaattctctgg |
7501045 |
T |
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| Q |
101 |
cccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaatctgttacttgaatctataggcatatgtc |
192 |
Q |
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| T |
7501044 |
ctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatggcaaatctgtaacttgaatttataggcttatgtc |
7500953 |
T |
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