View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21522_low_4 (Length: 625)

Name: NF21522_low_4
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21522_low_4
NF21522_low_4
[»] chr7 (9 HSPs)
chr7 (171-614)||(46638960-46639403)
chr7 (414-614)||(46620242-46620442)
chr7 (171-377)||(46620443-46620652)
chr7 (181-611)||(46630742-46631173)
chr7 (316-611)||(46172741-46173041)
chr7 (21-91)||(46639483-46639553)
chr7 (21-91)||(46620699-46620769)
chr7 (392-611)||(46641600-46641813)
chr7 (184-265)||(46172611-46172693)
[»] chr3 (2 HSPs)
chr3 (177-438)||(18373631-18373896)
chr3 (21-91)||(18373469-18373540)
[»] chr1 (1 HSPs)
chr1 (181-611)||(15767757-15768183)
[»] chr5 (1 HSPs)
chr5 (444-495)||(1537853-1537904)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 171 - 614
Target Start/End: Complemental strand, 46639403 - 46638960
Alignment:
Q  171 atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtca 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46639403 atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggacaaccatcagtacattctaaaccattttgttttcaaaggtca 46639304  T
Q  271 aaaactccatgatgatgacagaggcatgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggcacaaatatctagctaacac 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46639303 aaaactccatgatgatgacagaggcatgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggcacaaatatctagctaacac 46639204  T
Q  371 taccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagcctt 470  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46639203 taccatctccattgaaatatttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagcctt 46639104  T
Q  471 gcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctcta 570  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46639103 gcgacaaggattgaaaggatcttggtgtgtctggatgtctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctcta 46639004  T
Q  571 acggttaagggtctgttcctagagctctgtctcctcggattcat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46639003 acggttaagggtctgttcctagagctctgtctcctcggattcat 46638960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 414 - 614
Target Start/End: Complemental strand, 46620442 - 46620242
Alignment:
Q  414 agtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc 513  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46620442 agtcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc 46620343  T
Q  514 tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46620342 tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca 46620243  T
Q  614 t 614  Q
    |    
T  46620242 t 46620242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 171 - 377
Target Start/End: Complemental strand, 46620652 - 46620443
Alignment:
Q  171 atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtca 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  46620652 atggacaatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgtatccaaaggtca 46620553  T
Q  271 aaaactccatgatgatgacagaggc--atgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggc--acaaatatctagcta 366  Q
     ||||||||||| ||  | | | ||  ||||||||| |||  |||| ||||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  46620552 gaaactccatgacga-cagatatgcatatgtatcttcaaaataaatcactattgacctctactctttaacttaaccaattggcttgcaaatatctagcta 46620454  T
Q  367 acactaccatc 377  Q
    |||| ||||||    
T  46620453 acaccaccatc 46620443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 181 - 611
Target Start/End: Complemental strand, 46631173 - 46630742
Alignment:
Q  181 tgtctagtcatctggcagccttagaacacaattta-aagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactcca 279  Q
    |||||| |||| ||||||| ||||||||||||||  |||| ||| | ||| | ||||  ||||||| |||||| ||||||| |||  |||| ||||||||    
T  46631173 tgtctattcatttggcagctttagaacacaatttgcaagtaaggcaagaggagcatcgatacattcaaaaccaatttgtttacaacagtcagaaactcca 46631074  T
Q  280 tgatgatgacagag-gcatgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggca--caaatatctagctaacactaccat 376  Q
    ||||||   ||||  ||| ||| ||||||| |  | ||| |||||| ||||||||||||||||||||| |  |   ||||||| |||||| |  |||||     
T  46631073 tgatga---cagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagctacctttaccac 46630977  T
Q  377 ctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggca 476  Q
    ||||||| ||||| |||||||| |  ||||||| || ||| |||||||||||||||  |  | |||||||| ||||||||| | ||| | |||||| |||    
T  46630976 ctccattcaaatgcttttcttcctatgctaaaactgcagtaccatgatctgaacaatgacgaggcagcattgttttgcctcttttacaatccttgcagca 46630877  T
Q  477 aggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggtt 576  Q
    |||||||| | ||||||| || |||||||| |||||| |||| || |||||||||||||||| |||||||||||||||| |||||||||||||||| ||     
T  46630876 aggattgagatgatcttgttgcgtctggatgtctttccttttttgcctctttggcacatgcaagaattcatttgctatatattccaatgctctaactgtc 46630777  T
Q  577 aagggtctgttcctagagctctgtctcctcggatt 611  Q
    || ||||| || |||  ||||||||||||||||||    
T  46630776 aatggtctttttctattgctctgtctcctcggatt 46630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 611
Target Start/End: Original strand, 46172741 - 46173041
Alignment:
Q  316 actattgacttctactctttaacttaaccaattggca--caaatatctagctaacactac---catctccattgaaatgtttttcttcttgcgctaaaat 410  Q
    ||||||||  |||| |||||||||||||||| ||||   ||||||| ||||| |||||||   |||||||| | ||||| |||||||||||  ||  ||     
T  46172741 actattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaaatgcttttcttcttgtactgcaac 46172840  T
Q  411 tgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatct 510  Q
    || | |||| ||||||||||||  |  ||||||  ||  |||||||  ||| |||||||||||||||||||||||| |||||| ||| |||||| | |||    
T  46172841 tgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagccttgcggcaaggattgaaaagatctttgtgggtctggctgtct 46172940  T
Q  511 ttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggat 610  Q
    |||||||| ||| ||||  | |||||||   ||||||||||||||||||||||||||||||| || || |||||||| |||| |||||||||||| ||||    
T  46172941 ttctttttttgtttcttctgtacatgcaaatattcatttgctatacattccaatgctctaactgtcaacggtctgtttctagtgctctgtctcctgggat 46173040  T
Q  611 t 611  Q
    |    
T  46173041 t 46173041  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 46639553 - 46639483
Alignment:
Q  21 atcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattattccacttggacg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46639553 atcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattcttccacttggacg 46639483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 46620769 - 46620699
Alignment:
Q  21 atcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattattccacttggacg 91  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  46620769 atcaacgttgtataaatgaatggaggaccaacacataaaaacaaaattcctaacattcttccacttggacg 46620699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 392 - 611
Target Start/End: Original strand, 46641600 - 46641813
Alignment:
Q  392 tttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatc 491  Q
    ||||||||||  |||||| || | |||||||||||||||||  |  | |||||||| |||  |||| |||| ||||||||| ||||||||||||||||||    
T  46641600 tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc 46641699  T
Q  492 ttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttccta 591  Q
    || |||||      | ||| || |||| |||||  || |||||||||  ||||||||||| |||||||||||||||||||| || |  | |||||| |||    
T  46641700 ttagtgtg------tgtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttcta 46641793  T
Q  592 gagctctgtctcctcggatt 611  Q
    | ||| ||||||||| ||||    
T  46641794 gtgctttgtctcctcagatt 46641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 46172611 - 46172693
Alignment:
Q  184 ctagtcatctggcagccttagaacacaattt-aaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaa 265  Q
    |||||||||| ||||||||||||||||||||  |||||||| ||||||| |||| | |||||| || ||| ||||||| ||||    
T  46172611 ctagtcatctagcagccttagaacacaatttgcaagtcaggcaggagaagcatcggcacattcaaagccaatttgtttccaaa 46172693  T

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Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 177 - 438
Target Start/End: Original strand, 18373631 - 18373896
Alignment:
Q  177 aatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaact 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   |||||||||||||||||||||||| |||||||||||||||    
T  18373631 aatgtgtctagtcatctggcagccttagaacacaatttaaagtcaggtaagagaatctatagtacattctaaaccattttgtttccaaaggtcaaaaact 18373730  T
Q  277 ccatgatgatgacag--aggcatgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggc--acaaatatctagctaacacta 372  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  18373731 ccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactctttaacttaaccaattggcttgcaaatatctagctaacacta 18373830  T
Q  373 ccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataa 438  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||    
T  18373831 ccatctccattgaaatgtttttcttcttgtgctaaaactgcagtcccatgatctgaacaataataa 18373896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 18373469 - 18373540
Alignment:
Q  21 atcaatgttgtataaatgaatggaagaccaa-cacataaaaacaaaatttctaacattattccacttggacg 91  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| || ||||||||||    
T  18373469 atcaatgttgtataaatgaatggaggaccaaccacataaaaacaaaatttctaatattctttcacttggacg 18373540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 181 - 611
Target Start/End: Original strand, 15767757 - 15768183
Alignment:
Q  181 tgtctagtcatctggcagccttagaacacaattta-aagtcaggtaggagaaccatcagtacattctaaaccattttgttttcaaaggtcaaaaactcca 279  Q
    ||||||||||| ||||||||||||||| ||||||  |||| ||| | ||||| ||| | ||||||| |||||| |||| || |||| |||| ||||||||    
T  15767757 tgtctagtcatttggcagccttagaactcaatttgcaagtaaggcaagagaagcattaatacattcaaaaccaatttgattacaaaagtcagaaactcca 15767856  T
Q  280 tgatgatgacagaggcatgtatcttaaaagaaaataactattgacttctactctttaacttaaccaattggcac--aaatatctagctaacactaccatc 377  Q
    ||||||  | | ||||| ||| ||||||| |  |  ||||||||| ||||||||||||||||||||| | ||    ||| || ||||||||||||| |||    
T  15767857 tgatgac-agataggcaggtaacttaaaaaattaccactattgacctctactctttaacttaaccaagtagcttgaaaacatttagctaacactacgatc 15767955  T
Q  378 tccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaa 477  Q
    |||| | ||||||||||||||||| ||||||| || | | |||||||||||||||  || |      |||  |||||||  |||  ||||  ||| ||||    
T  15767956 tccaatcaaatgtttttcttcttgtgctaaaactgaattaccatgatctgaacaatgatga------attgatttgccttttgtttgagcactgcagcaa 15768049  T
Q  478 ggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggtta 577  Q
    ||||||||||||||||  ||||||||||| ||||||||||| ||||||||| | || |||||| ||||||||||||||||||| ||||||||||| || |    
T  15768050 ggattgaaaggatcttcatgtgtctggatgtctttctttttttgtctcttttgtacgtgcaggtattcatttgctatacattctaatgctctaactgtca 15768149  T
Q  578 agggtctgttcctagagctctgtctcctcggatt 611  Q
    | |||||||| |||| ||| |||| ||| |||||    
T  15768150 acggtctgtttctagtgctttgtcgcctaggatt 15768183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 1537904 - 1537853
Alignment:
Q  444 cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttgg 495  Q
    |||| |||||||||   |||||| ||||||||||||||||||||||||||||    
T  1537904 cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgg 1537853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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