View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_low_5 (Length: 538)
Name: NF21522_low_5
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 38997056 - 38997502
Alignment:
| Q |
13 |
aatatgaaccacaatattcatactgatactactactaacttactnnnnnnnn--gggacgcttggccatatcctgaattcagtggaaatgagctcactgg |
110 |
Q |
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| T |
38997056 |
aatatgaaccacaatattcatactgatactactactaccttactaaaaaaaaaagggacgcttggccatatcctgaattcagtggaaatgagctcactgg |
38997155 |
T |
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| Q |
111 |
caccatattctgttgggacttgcctcacctccttgcagccccaaaaacttaaccatttgaattcactaacaacaacatgttctgtccaagtccaacaaca |
210 |
Q |
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| T |
38997156 |
caccatattctgttgggacttgcctcacctccttgcagccccaaaaacttaaccatttgaattcactaacaacaacatgttctgtccaagtccaacaaca |
38997255 |
T |
|
| Q |
211 |
accaccagttcttgtacaaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattgcaaccaata |
310 |
Q |
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| T |
38997256 |
accaccagttcttgtacaaaaggataatcaattgaaaagaagagaagcaataggcctctccttgagttttggtcttctacattctttattgcaaccaata |
38997355 |
T |
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| Q |
311 |
atacccactgcaacagcagctgaagcagttccatgtcaattaactgtggctccttcaggcctttcctattgtgataaagttgttggctatggtcctcagg |
410 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38997356 |
atacccactgcaacagctgctgaagcagttccatgtcaattaactgtggctccttcaggcctttcctattgtgataaagttgttggctatggtcctcagg |
38997455 |
T |
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| Q |
411 |
ctgttaagggacagctcattaaggtaaccatgtcacagtttaatact |
457 |
Q |
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| T |
38997456 |
ctgttaagggacagctcattaaggtaaccatgtcacagtttaatact |
38997502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 477 - 522
Target Start/End: Original strand, 38997580 - 38997625
Alignment:
| Q |
477 |
attgtaaaagtagactttatataaccaatgaaatgaacaactaact |
522 |
Q |
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| T |
38997580 |
attgtaaaagtagactttatataactaattaaatgaacaactaact |
38997625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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