View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_low_7 (Length: 481)
Name: NF21522_low_7
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 3572535 - 3572100
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572535 |
gagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
3572436 |
T |
|
| Q |
114 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572435 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
3572336 |
T |
|
| Q |
214 |
tttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgttatgttatggtgttatttatatgttgttttcaacaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3572335 |
tttactaagtaaacaaataaatatctttattggcaatgttgatgatggctatattgaatgtgttatggtatggtgttatttatatgttgttttcaacaag |
3572236 |
T |
|
| Q |
314 |
ataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacataccactctataaatt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |
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| T |
3572235 |
ataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgagcattacagttgcttctcaaaccacatatcactttaaaaatt |
3572136 |
T |
|
| Q |
414 |
attttcttcctttcccaaacatatcaaatatccaca |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3572135 |
attttcttcctttcccaaacatatcaaatatccaca |
3572100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 3585399 - 3585594
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||| |||||||||| |
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| T |
3585399 |
gagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttccca |
3585498 |
T |
|
| Q |
114 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaatttt |
209 |
Q |
| |
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| |||||||||||||| || |||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||| |
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| T |
3585499 |
tcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatttt |
3585594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 3575819 - 3575635
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
113 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
3575819 |
gagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttccca |
3575720 |
T |
|
| Q |
114 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccat |
198 |
Q |
| |
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| |||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |
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| T |
3575719 |
tcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccat |
3575635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 3563840 - 3563623
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||| ||||||||| || | |||||||| |
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| T |
3563840 |
gagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccca |
3563741 |
T |
|
| Q |
114 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
213 |
Q |
| |
|
||| |||| | || || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||| | |
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| T |
3563740 |
ccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagtattttattc |
3563641 |
T |
|
| Q |
214 |
tttactaagtaaacaaat |
231 |
Q |
| |
|
||||||||||||||||| |
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| T |
3563640 |
cttactaagtaaacaaat |
3563623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 3569488 - 3569276
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttccca |
113 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||| || | |||||||| |
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|
| T |
3569488 |
gagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccca |
3569389 |
T |
|
| Q |
114 |
tgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaattttagtg |
213 |
Q |
| |
|
||| |||| |||| || |||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || | ||||| || |
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| T |
3569388 |
ccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccattgtggtatttttttg |
3569289 |
T |
|
| Q |
214 |
tttactaagtaaa |
226 |
Q |
| |
|
|||||||||||| |
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| T |
3569288 |
cttactaagtaaa |
3569276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 13275767 - 13275581
Alignment:
| Q |
15 |
agaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattcttcttggtggttgttttcctcatggtaattcttcccat |
114 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| ||||| || |||| |||| ||| ||||| ||||||||||| ||||||| | ||||| || |
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| T |
13275767 |
agaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaaactttcttt---gtggttgttttt-tcatggtgacccttccaat |
13275672 |
T |
|
| Q |
115 |
gacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtagaa |
205 |
Q |
| |
|
|||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
13275671 |
accaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgtagaa |
13275581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 3575500 - 3575427
Alignment:
| Q |
325 |
gtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacata |
399 |
Q |
| |
|
|||||||||||||||||||||| | | | | ||||||||||||| || ||||||| || | |||||||||||||| |
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|
| T |
3575500 |
gtccatatcttatgaaatctatatct-tgattttctattggtttggagcattacacttacatctcaaaccacata |
3575427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 38356855 - 38356807
Alignment:
| Q |
14 |
gagaatggacccaagtacttgacacggtctggaccgtaccacgggcttc |
62 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
38356855 |
gagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttc |
38356807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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