View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21522_low_8 (Length: 454)
Name: NF21522_low_8
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 11804107 - 11803676
Alignment:
| Q |
6 |
agcagcacagaaaaagacactgaaaacacaattcaacacaagagattgccattttctagggaaacccattgagttcaacactgcaataaggaattcccat |
105 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11804107 |
agcaacacagaaaaacacactgaaaacacaattcaacacaagagattgccattttctagggaaacccattgagttcaacactgcaataaggaattcccag |
11804008 |
T |
|
| Q |
106 |
tctatctggtcatatgcttttgtcatatctagtttgatgcttacacacccttttttaccacnnnnnnnnnctcaaccaatggaacgattcgaaagccact |
205 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11804007 |
tctattcggtcatatgcttttgtcatatctagtttgatgcttacacacccttttttaccactttttttttctcaaccaatggaacgattcgaaagccact |
11803908 |
T |
|
| Q |
206 |
aacgcattgtcagtaactaaat-gccccggaacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctattcgcaatagttttt |
304 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11803907 |
aacgcattgtcagtagttaaaccgccccggaacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctattcgcaatagttttt |
11803808 |
T |
|
| Q |
305 |
gaaataattttgtatattaccttgcaaagagatataggtcgaaaatcagttgccacttttggtttctttttctttggaatgagacaaataaatgtatgat |
404 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11803807 |
gaaataattttgtatattacattgcaaagagatataggtcgaaaatcagtcgctacttttggtttctttttctttggaatgagacaaataaatgtatgat |
11803708 |
T |
|
| Q |
405 |
taaggctacctggattcgctccatcatttagt |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
11803707 |
taaggctacctggattcgctccatcatttagt |
11803676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 407
Target Start/End: Complemental strand, 11599189 - 11599062
Alignment:
| Q |
280 |
tttcaacctattcgcaatagtttttgaaataattttgtatattaccttgcaaagagatataggtcgaaaatcagttgccacttttggtttctttttcttt |
379 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| ||||| | | || ||||||||||| ||| || |||||||| || ||| ||||||||||| || || |
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|
| T |
11599189 |
tttcaacctatttgcaattgtttttgtaattattttaaaaagaacattgcaaagagaaatatgtggaaaatcacatggcacctttggtttcttctttttc |
11599090 |
T |
|
| Q |
380 |
ggaatgagacaaataaatgtatgattaa |
407 |
Q |
| |
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||||||||||| ||| |||||| ||||| |
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| T |
11599089 |
ggaatgagacagatatatgtataattaa |
11599062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 20778615 - 20778182
Alignment:
| Q |
6 |
agcagcacagaaaaagacactgaa--aacacaattcaacacaagagattgccattttctagggaaacccattgagttcaacactgcaataaggaattccc |
103 |
Q |
| |
|
|||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
20778615 |
agcaacacataaaaagacacagaagaaacacaattcaacacaagagattgccatttttgagggaaacccattgagttcaacaccgcaataaggaattccc |
20778516 |
T |
|
| Q |
104 |
attctatctggtcatatgcttttgtcatatctagtttgatgcttacacacccttttttaccacnnnnnnnnn-ctcaaccaatggaacgattcgaaagcc |
202 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||| |||| ||| ||||| |||||||||||| |
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|
| T |
20778515 |
attctatccggtcatatgcttttgccatatctagtttgatgcctacacacccctttttgccactcttttttttctcatccactggaatgattcgaaagcc |
20778416 |
T |
|
| Q |
203 |
actaacgcattgtcagtaactaaatgccccggaacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctattcgcaatagttt |
302 |
Q |
| |
|
||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |
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|
| T |
20778415 |
actaatgcattgtcagtaattaaacgccctggaacaaaagcactttgaaattttccaataatgttggagaggatgattttcaacctatttgcaatagttt |
20778316 |
T |
|
| Q |
303 |
ttgaaataattttgtatattaccttgcaaagagatataggtcgaaaatcagttgccacttttggtttctttttctttggaatgagacaaataaatgtatg |
402 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20778315 |
ttgaaataattttgcatattacattgcaaagagatataggtcgaaaatcattcgccactttttgtttctttttctttggaatgagacaaataaaagtatg |
20778216 |
T |
|
| Q |
403 |
attaaggctacctggattcgctccatcatttagt |
436 |
Q |
| |
|
||||| | ||||||||||| ||||||| |||||| |
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|
| T |
20778215 |
attaatgttacctggattcactccatcgtttagt |
20778182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 5142327 - 5142210
Alignment:
| Q |
235 |
aacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctattcgcaatagtttttgaaataattttgtatattaccttgcaaaga |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||| | ||||| | || ||||| ||||| | |
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|
| T |
5142327 |
aacaaaagcactttgaaattttccaataatgtcaggtagtataattttcaacctatttgcaatagttttaaatataatcctataaattacattgcacaac |
5142228 |
T |
|
| Q |
335 |
gatataggtcgaaaatca |
352 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
5142227 |
gatataggtcgaaaatca |
5142210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 401
Target Start/End: Original strand, 14071625 - 14071836
Alignment:
| Q |
191 |
gattcgaaagccactaacgcattgtcagtaactaaatgccccggaacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctat |
290 |
Q |
| |
|
||||| ||||| | ||| ||||| | ||||| |||| | |||||||||||||||||||| ||||||||||| || || | || | | ||||||||||| |
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|
| T |
14071625 |
gattcaaaagctagtaaggcattatgagtaattaaacgtcccggaacaaaagcactttggaattttccaatgatatccggaagaatcaatttcaacctat |
14071724 |
T |
|
| Q |
291 |
tcgcaatagtttttgaaataattttgtatattaccttgcaaagagatataggtcgaaaatcagttgccacttttggtttc-tttttctttggaatgagac |
389 |
Q |
| |
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| | ||| ||||||| ||| ||||| | || || |||||||| || ||||||||||||||| || ||| || || ||| ||||| ||| ||||||||| |
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| T |
14071725 |
ttgaaattgtttttgtaattattttaaaaatgacattgcaaagtgaaataggtcgaaaatcatctggcaccttcggcttctttttttttttgaatgagac |
14071824 |
T |
|
| Q |
390 |
aaataaatgtat |
401 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
14071825 |
agatatatgtat |
14071836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 401
Target Start/End: Original strand, 14381653 - 14381864
Alignment:
| Q |
191 |
gattcgaaagccactaacgcattgtcagtaactaaatgccccggaacaaaagcactttgaaattttccaataatgtcagagaggacgattttcaacctat |
290 |
Q |
| |
|
||||| ||||| | ||| ||||| | ||||| |||| | |||||||||||||||||||| ||||||||||| || || | || | | ||||||||||| |
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|
| T |
14381653 |
gattcaaaagctagtaaggcattatgagtaattaaacgtcccggaacaaaagcactttggaattttccaatgatatccggaagaatcaatttcaacctat |
14381752 |
T |
|
| Q |
291 |
tcgcaatagtttttgaaataattttgtatattaccttgcaaagagatataggtcgaaaatcagttgccacttttggtttc-tttttctttggaatgagac |
389 |
Q |
| |
|
| | ||| ||||||| ||| ||||| | || || |||||||| || ||||||||||||||| || ||| || || ||| ||||| ||| ||||||||| |
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|
| T |
14381753 |
ttgaaattgtttttgtaattattttaaaaatgacattgcaaagtgaaataggtcgaaaatcatctggcaccttcggcttctttttttttttgaatgagac |
14381852 |
T |
|
| Q |
390 |
aaataaatgtat |
401 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
14381853 |
agatatatgtat |
14381864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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