View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21522_low_9 (Length: 433)
Name: NF21522_low_9
Description: NF21522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21522_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 49297400 - 49296984
Alignment:
| Q |
8 |
ccaagaaaatataatatcataatgcaaaaaggttgtaacttgtggaaccatgtagtatt-----taatttattatcaatacttataaaaaagataacatt |
102 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49297400 |
ccaataaaatataatatcataatgcaaaaaggtagtaacttgtggaaccatgtagtattccctttaatttattatcaatacttataaaaaagataacatt |
49297301 |
T |
|
| Q |
103 |
acatttaacccttaaaaaagaaggctaaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcacc |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297300 |
acatttaacccttaaaaaagaaggctaaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcacc |
49297201 |
T |
|
| Q |
203 |
ccaaatctatcaattaagttagactaattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaa |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49297200 |
ccaaatctatcaattaagttagactaattaattatacctagtgccataatctctaagattaactcaacattgcctctctatat-atatataaccaaaaaa |
49297102 |
T |
|
| Q |
303 |
ggtcaacttattattattaagtagatttgtgtgagc---ctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggtta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297101 |
ggtcaacttattattattaagtagatttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggtta |
49297002 |
T |
|
| Q |
400 |
agatgaagactcataact |
417 |
Q |
| |
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|||||||||||||||||| |
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| T |
49297001 |
agatgaagactcataact |
49296984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 49290424 - 49290033
Alignment:
| Q |
33 |
aaaaaggttgtaacttgtggaaccatgtagtatt-----taatttattatcaatacttataaaaaagataacattacatttaacccttaaaaaagaaggc |
127 |
Q |
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||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290424 |
aaaaatgtagtaacttgtggaaccatgtagtattccctttaatttattatcaatacttataaaaaagataacattacatttaacccttaaaaaagaaggc |
49290325 |
T |
|
| Q |
128 |
taaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
227 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290324 |
taaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
49290225 |
T |
|
| Q |
228 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtaga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290224 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctctat-atatataaccaaaaaaggtcaacttattattattaagtaga |
49290126 |
T |
|
| Q |
328 |
tttgtgtgagc---ctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataact |
417 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290125 |
tttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataact |
49290033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 49303788 - 49303714
Alignment:
| Q |
343 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataact |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303788 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataact |
49303714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 49304022 - 49303986
Alignment:
| Q |
97 |
aacattacatttaacccttaaaaaagaaggctaaaca |
133 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
49304022 |
aacattacatttaaccccgaaaaaagaaggctaaaca |
49303986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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