View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21523_low_1 (Length: 416)
Name: NF21523_low_1
Description: NF21523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21523_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 1854405 - 1853996
Alignment:
| Q |
1 |
tggacacaactgcgacgactaattcttcgacttagatagaaatacaagaacaaacattctcaatttctcattcaagagttttaatactgctacattctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1854405 |
tggacacaactgcgacgactaattttttgacttagatagaaatataagaacaaacattctcaatttctcattcaagagttttaatactgctacattctcc |
1854306 |
T |
|
| Q |
101 |
ggtagataatataaaacaaaagtactaattatcacttcatgaactttgatgctacaaaatcaacacactaatcttcaataattatgagagtaaccaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1854305 |
ggtagataatataaaacaaaagtactaattatcacttcatgaactttgatgctacaaaatcaacacactaatcttcaataattatgagagtaaccaacat |
1854206 |
T |
|
| Q |
201 |
aatttaacctaggacgaatattatggtggctaaattttggatcaccataatcaacagcctttatcaccatagcctcacgtcttccatcatgttcttgaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1854205 |
aatttaacctaggacgaatattatggtggctaaattttggatcaccataatcaacagcctttatcaccatagcctcacgtcttccatcatgttcttgaac |
1854106 |
T |
|
| Q |
301 |
tgcaccaaacacaatctcatttgtttcacaattcttctcatagtaactcgacggagtagtcgaagaataatgactttgcacctttgaatgttgtggttgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1854105 |
tgcaccaaacacaatctcatttgtttcacaattcttctcatagtaactcgatggagtagtcgaagaataatgactttgcaccttcgaatgttgtggttgt |
1854006 |
T |
|
| Q |
401 |
tgatgatgat |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
1854005 |
tgatgatgat |
1853996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University