View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21523_low_2 (Length: 404)
Name: NF21523_low_2
Description: NF21523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21523_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 106 - 391
Target Start/End: Original strand, 22911267 - 22911552
Alignment:
| Q |
106 |
tcttgttttaactatatctgcttatgtcgattgctactttgttttgttttaactattgaaattagaaatatatcctaaaatctcttttttatttatagtt |
205 |
Q |
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| T |
22911267 |
tcttgttttagctatatctgcttatgtcgattgctactttgttttgttttaactattgaaattagaaatatatcctaaaatctcttttttatttatagtt |
22911366 |
T |
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| Q |
206 |
tattggattaaattgatt--nnnnnnnncacgtcaaaaactaaaataactaatgactagtaacatttgagaatgtgcatgcaaatttgacatacaaatat |
303 |
Q |
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| T |
22911367 |
tattggattaaattgattaacaaaagaacacgtctaaaactaaaacaactaatgactaggaacatttgagaatgtgcatgcaaatttgacttacaaatat |
22911466 |
T |
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| Q |
304 |
acgtcgcagaattagttatagaagtattttaatattattctttaaaagaaaatattttaagaaataacatgttgtttaatgttataga |
391 |
Q |
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| T |
22911467 |
atgtcgcagaattagttatagaagtattttaatattct--ttaaaaaaaaaatattttaagaaataacaggttgtttaatgttataga |
22911552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 22911188 - 22911234
Alignment:
| Q |
67 |
ttattctgaaaaggaaaattgaacattcaacaagacttgtcttgttt |
113 |
Q |
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| T |
22911188 |
ttattttgaaaaggaaaattgaacattcaacaagacgtgtcttgttt |
22911234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 30235937 - 30235906
Alignment:
| Q |
40 |
ataggagtcagttttagggggtgatgtttatt |
71 |
Q |
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| T |
30235937 |
ataggagtcagttttagggggtgatgtttatt |
30235906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 18681327 - 18681370
Alignment:
| Q |
28 |
tggttggaaagaataggagtcagttttagggggtgatgtttatt |
71 |
Q |
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| T |
18681327 |
tggttggtaagtataggagtcagttttagggggtgatgtttatt |
18681370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 43373910 - 43373881
Alignment:
| Q |
42 |
aggagtcagttttagggggtgatgtttatt |
71 |
Q |
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| T |
43373910 |
aggagtcagttttagggggtgatgtttatt |
43373881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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