View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21523_low_4 (Length: 291)

Name: NF21523_low_4
Description: NF21523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21523_low_4
NF21523_low_4
[»] chr3 (20 HSPs)
chr3 (12-279)||(55032514-55032778)
chr3 (12-148)||(55035509-55035642)
chr3 (213-286)||(17532492-17532565)
chr3 (213-284)||(53815126-53815197)
chr3 (213-279)||(6445436-6445502)
chr3 (213-281)||(35411834-35411902)
chr3 (213-279)||(23299328-23299394)
chr3 (214-279)||(52198464-52198529)
chr3 (218-286)||(54736631-54736699)
chr3 (213-279)||(6922049-6922115)
chr3 (216-286)||(16185434-16185504)
chr3 (216-286)||(18645519-18645589)
chr3 (213-279)||(28265160-28265226)
chr3 (213-284)||(54460531-54460601)
chr3 (216-278)||(538175-538237)
chr3 (216-286)||(10884170-10884240)
chr3 (209-269)||(9392057-9392117)
chr3 (218-272)||(8462338-8462392)
chr3 (216-278)||(10107405-10107467)
chr3 (209-270)||(17537514-17537575)
[»] chr6 (7 HSPs)
chr6 (12-286)||(5738766-5739037)
chr6 (12-149)||(1126421-1126556)
chr6 (213-278)||(9953196-9953261)
chr6 (216-286)||(2371565-2371635)
chr6 (216-286)||(34501566-34501636)
chr6 (213-279)||(23379588-23379654)
chr6 (213-279)||(23388927-23388993)
[»] chr8 (13 HSPs)
chr8 (17-286)||(5540569-5540843)
chr8 (213-279)||(25595459-25595525)
chr8 (213-279)||(17895292-17895358)
chr8 (213-279)||(25592274-25592340)
chr8 (137-272)||(23612745-23612880)
chr8 (213-279)||(18722085-18722151)
chr8 (213-278)||(33878013-33878078)
chr8 (216-281)||(43682575-43682640)
chr8 (213-286)||(45156693-45156766)
chr8 (217-281)||(20520109-20520173)
chr8 (209-278)||(10663171-10663240)
chr8 (216-279)||(25228171-25228234)
chr8 (213-279)||(30640668-30640734)
[»] chr2 (12 HSPs)
chr2 (213-284)||(10600117-10600188)
chr2 (213-286)||(25873355-25873428)
chr2 (213-286)||(38006061-38006134)
chr2 (213-281)||(25821692-25821760)
chr2 (213-286)||(36809210-36809283)
chr2 (209-279)||(25139811-25139881)
chr2 (216-286)||(26358824-26358894)
chr2 (216-286)||(29439727-29439797)
chr2 (213-286)||(25869987-25870060)
chr2 (213-282)||(30275467-30275535)
chr2 (217-269)||(16788557-16788609)
chr2 (209-270)||(30925919-30925980)
[»] chr5 (14 HSPs)
chr5 (216-286)||(32837235-32837305)
chr5 (214-286)||(21336497-21336569)
chr5 (214-281)||(21827796-21827863)
chr5 (209-279)||(22937826-22937896)
chr5 (213-286)||(37214918-37214991)
chr5 (217-284)||(28788179-28788246)
chr5 (214-273)||(21333481-21333540)
chr5 (212-272)||(40916661-40916721)
chr5 (221-286)||(14376638-14376702)
chr5 (216-279)||(42061645-42061708)
chr5 (216-286)||(43490945-43491015)
chr5 (218-279)||(31863031-31863092)
chr5 (218-286)||(28441961-28442029)
chr5 (213-281)||(39191488-39191556)
[»] chr4 (18 HSPs)
chr4 (209-286)||(19861058-19861135)
chr4 (213-281)||(3798571-3798639)
chr4 (209-277)||(33410733-33410801)
chr4 (213-286)||(15431316-15431389)
chr4 (213-286)||(15437930-15438003)
chr4 (209-272)||(27013396-27013459)
chr4 (216-286)||(37104039-37104109)
chr4 (212-281)||(12237511-12237580)
chr4 (209-286)||(19865414-19865491)
chr4 (166-279)||(40617543-40617653)
chr4 (216-279)||(18910763-18910826)
chr4 (216-286)||(5721749-5721819)
chr4 (209-286)||(53093873-53093949)
chr4 (216-286)||(9717103-9717173)
chr4 (212-278)||(49269895-49269960)
chr4 (213-286)||(5680621-5680694)
chr4 (218-278)||(5669788-5669848)
chr4 (219-270)||(48014721-48014772)
[»] chr1 (6 HSPs)
chr1 (213-286)||(1951120-1951193)
chr1 (213-286)||(49499343-49499416)
chr1 (216-286)||(2793451-2793521)
chr1 (216-286)||(42021875-42021945)
chr1 (214-286)||(34733040-34733111)
chr1 (216-286)||(29644086-29644156)
[»] scaffold0035 (1 HSPs)
scaffold0035 (212-279)||(61756-61823)
[»] chr7 (8 HSPs)
chr7 (213-284)||(45287912-45287983)
chr7 (213-284)||(45291248-45291319)
chr7 (216-279)||(8276171-8276234)
chr7 (216-286)||(10431538-10431608)
chr7 (216-279)||(26556669-26556732)
chr7 (213-286)||(4542226-4542298)
chr7 (216-286)||(2442056-2442125)
chr7 (209-255)||(13810185-13810231)
[»] scaffold0381 (1 HSPs)
scaffold0381 (209-272)||(6324-6387)
[»] scaffold0270 (3 HSPs)
scaffold0270 (213-280)||(834-901)
scaffold0270 (213-280)||(4194-4261)
scaffold0270 (213-280)||(11324-11391)
[»] scaffold0005 (1 HSPs)
scaffold0005 (216-286)||(291115-291185)
[»] scaffold0080 (1 HSPs)
scaffold0080 (216-286)||(26397-26467)
[»] scaffold0015 (1 HSPs)
scaffold0015 (216-286)||(197383-197453)
[»] scaffold0009 (1 HSPs)
scaffold0009 (209-255)||(34993-35039)
[»] scaffold0321 (1 HSPs)
scaffold0321 (216-268)||(3624-3676)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 55032514 - 55032778
Alignment:
Q  12 acctagttcctttctttctacacaagcatattatttacgcggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaaagc 111  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55032514 acctagttcctttctttctacacaagcatgttatttacg--gtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaa-gc 55032610  T
Q  112 ccaatcttcttttgattccagcgcccccaaactacttcctgaggtctattttctttttgtttaattcacactaccaaaaataaataaatactttcaat-- 209  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||| |||  |||||||||||       
T  55032611 ccaatcttcttttgattccagcgcccccaaactacttcctatggtctattttccttttgattaattcacactaccaaaaaaaaa--aatactttcaaatc 55032708  T
Q  210 agggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55032709 agggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 55032778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 55035509 - 55035642
Alignment:
Q  12 acctagttcctttctttctacacaagcatattatttacgcggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaaagc 111  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55035509 acctagttcctttctttctacacaagcatgttatttacg--gtcaactccttaatccttctcattgatccatttagcacatcaatgcttggttt-aaagc 55035605  T
Q  112 ccaatcttcttttgattccagcgcccccaaactactt 148  Q
    |||||||||||||||||||||||| ||||||||||||    
T  55035606 ccaatcttcttttgattccagcgctcccaaactactt 55035642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 17532492 - 17532565
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  17532492 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatatcgaatgaacctcatcctgtgct 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 53815197 - 53815126
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  53815197 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctatg 53815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 6445436 - 6445502
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6445436 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 6445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 35411902 - 35411834
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  35411902 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 35411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 23299328 - 23299394
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23299328 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 23299394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 52198529 - 52198464
Alignment:
Q  214 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  52198529 ttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatc 52198464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 54736631 - 54736699
Alignment:
Q  218 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  54736631 taaaatcgtgtcacgaaatagacatcgtgacacgttttaaccaataccgaatgaacctcatcctatgct 54736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 6922115 - 6922049
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  6922115 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttcaccaatgttgaatgaacctcatc 6922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 16185434 - 16185504
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  16185434 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 16185504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 18645519 - 18645589
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  18645519 cctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 18645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 28265226 - 28265160
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  28265226 gttcctaaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaatgaacttcatc 28265160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 54460601 - 54460531
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  54460601 gttcttaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatcttgaatgaa-ctcatcctatg 54460531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 538237 - 538175
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||    
T  538237 cctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacttcat 538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 10884240 - 10884170
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||| ||||| ||||    
T  10884240 cctaaaatcgtgtcacgaaatggccatcatgacacgttttaatcaatgtcgaatgaacctaatcctgtgct 10884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 9392117 - 9392057
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 269  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  9392117 taggattcttaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgaat 9392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 8462338 - 8462392
Alignment:
Q  218 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaa 272  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  8462338 taaaatcgtgtcacgaaatagccatcgtgatacgttttaatcaatgtcgaatgaa 8462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 10107405 - 10107467
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    ||||||||||||||||||||||  |||||| || |||||||||||||||| ||| ||| ||||    
T  10107405 cctaaaatcgtgtcacgaaataaccatcgtaacgcgttttaaccaatgtcaaattaacttcat 10107467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 17537575 - 17537514
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatg 270  Q
    ||||||| || ||||||||||||||||| || | ||||||||||||| | |||| |||||||    
T  17537575 tagggtttctcaaatcgtgtcacgaaatggtaaccgtgacacgttttcatcaatatcgaatg 17537514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 5738766 - 5739037
Alignment:
Q  12 acctagttcctttctttctacacaagcatattatttacgcggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaaagc 111  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5738766 acctagttactttctttctacacaagcatgttatttacg-ggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaa-gc 5738863  T
Q  112 ccaatcttcttttgattccagcgcccccaaactacttcctgaggtctattttctttttgtttaattcacactaccaaaaataaataaatactttcaa--t 209  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||   ||||||||||||||||  |    
T  5738864 ccaatcttcttttgattccagcgcccccatactacttcatgtggtctattttccttttgtttaattcacactaccaaa---aaataaatactttcaaatt 5738960  T
Q  210 agggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  5738961 agggttcctaaaatcgtgtcacgaaatagccatcgtgacgcgttttaaccaatgtcgaatgaacctcatcctttgct 5739037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 1126421 - 1126556
Alignment:
Q  12 acctagttcctttctttctacacaagcatattatttacgcggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaaagc 111  Q
    |||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1126421 acctagttaccttctttctacacaagcatgttatttacg-ggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggttt-aaagc 1126518  T
Q  112 ccaatcttcttttgattccagcgcccccaaactacttc 149  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1126519 ccaatcttcttttgattccagcgcccccatactacttc 1126556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 9953261 - 9953196
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9953261 gttcctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 9953196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 2371635 - 2371565
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||    
T  2371635 cctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcgtcctgtgct 2371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 34501636 - 34501566
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||| |||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  34501636 cctaaaattgtgtcatgaaatagccatcgtgacacgttttagctaatgtcgaatgaacctcatcctatgct 34501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 23379588 - 23379654
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||    
T  23379588 gttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23379654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 23388927 - 23388993
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||    
T  23388927 gttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23388993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 5540569 - 5540843
Alignment:
Q  17 gttcctttctttctacacaagcatattatttacgcggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaaagcccaat 116  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5540569 gttcctttctttctacacaagcatgttatttacg--gtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaa-gcccaat 5540665  T
Q  117 cttcttttgattccagcgcccccaaactacttcctgaggtctattttctttttgtttaattcacactaccaaaaata-------aataaatactttc-aa 208  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||| |       ||||||||||||| ||    
T  5540666 cttcttttgattccagcgcccccaaactaactcctgtggtctattttccttttgtttaattcacactaccaaaaaaaaaaaaacaataaatactttcaaa 5540765  T
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5540766 ttaggttcctaaaatcatgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 5540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 25595459 - 25595525
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25595459 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 25595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 17895292 - 17895358
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17895292 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 17895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 25592274 - 25592340
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25592274 gttcctaaaatcgtgtcacgaaatagtcatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25592340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 23612880 - 23612745
Alignment:
Q  137 cccaaactacttcctgaggtctattttctttttgtttaattcacactaccaaaaataaataaatactttcaa--tagggttcctaaaatcgtgtcacgaa 234  Q
    |||| |||||||  || ||||| ||||  ||||||||||||||||| | ||||||  ||||||||||| |||  || |||||||||||||||||||||||    
T  23612880 cccatactactttatgtggtctgtttttcttttgtttaattcacaccatcaaaaa--aataaatacttccaaactaaggttcctaaaatcgtgtcacgaa 23612783  T
Q  235 atagtcatcgtgacacgttttaaccaatgtcgaatgaa 272  Q
    |||| ||| |||||||||||||| ||||||||||||||    
T  23612782 atagccattgtgacacgttttaaacaatgtcgaatgaa 23612745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 18722085 - 18722151
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  18722085 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccgatatcgaatgaacctcatc 18722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 33878013 - 33878078
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  33878013 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcat 33878078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 43682575 - 43682640
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  43682575 cctaaaatcgtgtcacgaaatagccgtcgtgacacgttttaaccaatgtcgaatgaacctcatcct 43682640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 45156693 - 45156766
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  45156693 gttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaatcaatgtcgaatgaacctcatcctgtgct 45156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 20520173 - 20520109
Alignment:
Q  217 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20520173 ctaaaatcgtgtcacgaaatagccattgtgacacgttttaaccaatgtcgaatgaacctcatcct 20520109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 10663240 - 10663171
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  10663240 taggattcctaaaatcgtgtcacgaaatatccatcgtgacacgttttaaccaatgtcgattgaacctcat 10663171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 25228234 - 25228171
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||    
T  25228234 cctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25228171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 30640734 - 30640668
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||| |||||||| |||||||||||  |||||| ||||||||||||||||  |||| |||| |||||    
T  30640734 gttcttaaaatcgcgtcacgaaatacacatcgttacacgttttaaccaataccgaaagaacttcatc 30640668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 10600188 - 10600117
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10600188 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 10600117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 25873428 - 25873355
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25873428 gttcctaaaatcgtgtcacgaaatagccatcgtgacacggtttaaccaatgtcgaatgaacctcatcctgtgct 25873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 38006061 - 38006134
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38006061 gttcctgaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 38006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 25821692 - 25821760
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  25821692 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 25821760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 36809210 - 36809283
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  36809210 gttcctaaaatcgtgtcacaaaatagccatcgtgacacgttttaaccaatgtcgaatgaatctcatcctgtgct 36809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 25139811 - 25139881
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||    
T  25139811 tagggttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaactaatgtctaatgaacctcatc 25139881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 26358894 - 26358824
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  26358894 cctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgccgaatgaacctcatcctgtgct 26358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 29439797 - 29439727
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  29439797 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaatgaacttcatcctgtgct 29439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 25870060 - 25869987
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  25870060 gttcctaaaatcgtatcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacttcatcctgtgct 25869987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 30275467 - 30275535
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatccta 282  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  30275467 gttcttaaaatcgtgtcacgaaataaccatcgtgacacgttttaaccaatgtcgaatgaa-ctcatccta 30275535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 16788609 - 16788557
Alignment:
Q  217 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 269  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  16788609 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaat 16788557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 30925980 - 30925919
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatg 270  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||   ||||||||||||    
T  30925980 tagggttcctgaaatcgtgtcacgaattagccatcgtgacacgttttgctcaatgtcgaatg 30925919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 32837305 - 32837235
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32837305 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaactcatcctatgct 32837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 21336497 - 21336569
Alignment:
Q  214 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21336497 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 21336569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 21827796 - 21827863
Alignment:
Q  214 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21827796 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 21827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 22937826 - 22937896
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  22937826 tagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 22937896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 37214991 - 37214918
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37214991 gttcctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 37214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 28788179 - 28788246
Alignment:
Q  217 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  28788179 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 28788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 21333481 - 21333540
Alignment:
Q  214 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaac 273  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21333481 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaac 21333540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 40916661 - 40916721
Alignment:
Q  212 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaa 272  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40916661 ggttcgtaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 40916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 14376638 - 14376702
Alignment:
Q  221 aatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  14376638 aatcgtgtcacgaaatagccatcgtgacacgttttaa-caatgtcgaatgaacctcatcctgtgct 14376702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 42061708 - 42061645
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  42061708 cctaaaatcatgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatc 42061645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 43491015 - 43490945
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||| | ||||||||||||||| ||||    
T  43491015 cctaaaatcgtgttacgaaatagacatcgtgatacgttttaaccaatgccaaatgaacctcatcctgtgct 43490945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 31863092 - 31863031
Alignment:
Q  218 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||    
T  31863092 taaaatcgtgtcacgaaatagccatcgtgacacgatttaaacaatgtcgaatgaacttcatc 31863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 28441961 - 28442029
Alignment:
Q  218 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||| || ||||||||||||| ||||    
T  28441961 taaaatcgtgtcacgaaatagccatcatgacacgttttagccaatgttgagtgaacctcatcctgtgct 28442029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 39191556 - 39191488
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||||||||||| |||||| |||||||||||    
T  39191556 gttcttaaaatcgtgttacgaaatagacattgtgacacgttttaaccaatatcgaataaacctcatcct 39191488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 19861058 - 19861135
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  19861058 tagggttcctaaaatcgtgtcacgaaatagccatcttgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 19861135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 3798571 - 3798639
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3798571 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 3798639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 33410733 - 33410801
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctca 277  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33410733 tagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctca 33410801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 15431389 - 15431316
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  15431389 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 15438003 - 15437930
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  15438003 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 27013459 - 27013396
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaa 272  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27013459 tagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 27013396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 37104039 - 37104109
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  37104039 cctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 37104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 12237580 - 12237511
Alignment:
Q  212 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 281  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  12237580 ggttcctaaaatcgtgtcacgaaatagccatcgtgacatattttaaccaatgtcgaatgaacctcatcct 12237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 19865414 - 19865491
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||||    
T  19865414 tagggttcctaaaatcgtgtcacgaaatagccatcttagcacgttttaaccaatgtcgaatgaacctcatcctgtgct 19865491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 40617543 - 40617653
Alignment:
Q  166 ttttgtttaattcacactaccaaaaataaataaatactttcaa--tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatg 263  Q
    ||||||||||||||||| || |||| ||||     ||||||||  || ||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  40617543 ttttgtttaattcacaccacaaaaagtaaa-----actttcaaattaaggttcctaaaatcgtgtcacgaaatagccatcgtgactcgttttaatcaatg 40617637  T
Q  264 tcgaatgaacctcatc 279  Q
    ||||||||||||||||    
T  40617638 tcgaatgaacctcatc 40617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 18910826 - 18910763
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18910826 cctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 18910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 5721749 - 5721819
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5721749 cctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 5721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 53093949 - 53093873
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||    
T  53093949 tagggtttctaaaatcgtgtcacgaaatagccatcgtgacacgttct-accaatgtcgaatgaacctcatcctgtgct 53093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 9717173 - 9717103
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||||| ||||    
T  9717173 cctaaaatcgtgtcacgaaagagccatcgtgacacgatttaaccaatgtcgaacgaacctcatcctgtgct 9717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 49269960 - 49269895
Alignment:
Q  212 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  49269960 ggttcctaaaatcgtgtcacgaaatag-cattgtgacacgttttaaccaatgtcgaatgaatctcat 49269895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 5680694 - 5680621
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||| |||||||  |  ||||||||||||||||||||||||||||||||||| |||||||    
T  5680694 gttcctaaaatcgtgtcaagaaatagcaaaagtgacacgttttaaccaatgtcgaatgaacctcattctatgct 5680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 5669848 - 5669788
Alignment:
Q  218 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcat 278  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  5669848 taaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaataaacctcat 5669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 48014721 - 48014772
Alignment:
Q  219 aaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatg 270  Q
    ||||| |||||||||||||| |||| ||||||||||| | ||||||||||||    
T  48014721 aaaattgtgtcacgaaatagccatcatgacacgttttcatcaatgtcgaatg 48014772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 1951120 - 1951193
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  1951120 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccactgtcgaatgaacctcatcctatgct 1951193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 49499343 - 49499416
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  49499343 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcatatgct 49499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 2793521 - 2793451
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  2793521 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 2793451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 42021945 - 42021875
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  42021945 cctaaaatcgtgtcacgaaatagccatcgtaacacgttttaaccaatgtcgaatgaacctcatccgatgct 42021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 34733040 - 34733111
Alignment:
Q  214 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  34733040 ttcctaaaatcatgtcacgaaatagccatcgtgacacatttt-accaatgtcgaatgaacctcatcctgtgct 34733111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 29644086 - 29644156
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||| ||||    
T  29644086 cctaaaatcatgtcacgaaatagccatcgtaacacgttttagccaatgtcgaatgaatctcatcctgtgct 29644156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 61823 - 61756
Alignment:
Q  212 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  61823 ggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 61756  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 45287912 - 45287983
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  45287912 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcttatg 45287983  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 45291248 - 45291319
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  45291248 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcattctatg 45291319  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 8276234 - 8276171
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8276234 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 8276171  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 10431608 - 10431538
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  10431608 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 10431538  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 26556732 - 26556669
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 279  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26556732 cctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatc 26556669  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 4542298 - 4542226
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||    
T  4542298 gttcctaaaattgtgtcacgaaatatccatcgtgacaagttttaaccaatgtcgaatgaa-ctcatcctatgct 4542226  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 2442056 - 2442125
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||| |||||||||||||    
T  2442056 cctaaaatcgtgtcacgaaatagccatcgtgatacgttttagccaatgtcgagtgaa-ctcatcctatgct 2442125  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 13810185 - 13810231
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgtttt 255  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||    
T  13810185 tagggttcctgaaatcgtgtaaccaaatagtcatcgtgacacgtttt 13810231  T

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Target: scaffold0381 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 6324 - 6387
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaa 272  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6324 tagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaa 6387  T

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Target: scaffold0270 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 834 - 901
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  834 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 901  T

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Target: scaffold0270; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 4194 - 4261
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  4194 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 4261  T

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Target: scaffold0270; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 11324 - 11391
Alignment:
Q  213 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcc 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  11324 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 11391  T

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Target: scaffold0005 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 291185 - 291115
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  291185 cctaaaatcgtgttacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaccttatcctgtgct 291115  T

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Target: scaffold0080 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 26467 - 26397
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26467 cctaaaaccgtgttacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 26397  T

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Target: scaffold0015 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 197453 - 197383
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgct 286  Q
    ||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  197453 cctaaaatcgtgtcatgaaatagccatcgtgacacattttaatcaatgtcgaatgaacctcatcctgtgct 197383  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 34993 - 35039
Alignment:
Q  209 tagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgtttt 255  Q
    |||||||||| |||||||||||||||||||||| ||| ||| |||||    
T  34993 tagggttcctgaaatcgtgtcacgaaatagtcagcgttacatgtttt 35039  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 3624 - 3676
Alignment:
Q  216 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaa 268  Q
    ||||||||||||||||||  | ||||||||||||||||||   ||||||||||    
T  3624 cctaaaatcgtgtcacgattttgtcatcgtgacacgttttcctcaatgtcgaa 3676  T

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