View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21524_high_1 (Length: 434)
Name: NF21524_high_1
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 5822078 - 5821672
Alignment:
| Q |
18 |
aacccttgttgaactgtacttttataagcaattcttaacttattattgtacttttcagttgctttttcctcaccagtaaaagaggcaacctgattaagaa |
117 |
Q |
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| T |
5822078 |
aacccttgttgaactgtacttttataagcaattcttaacttattattgtacttttcagttgctttttcctcaccagtaaaagaggcaacctgattaagaa |
5821979 |
T |
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| Q |
118 |
aaggatttatatcaaggactatgctaattaagttttctacaagttaatnnnnnnntatatcttactgttctaatggccccaactgtttgttccacaacaa |
217 |
Q |
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| T |
5821978 |
aaggatttatatcaaggactatgctaattaagttttctacaagttaataaaaatatatatcttactgttctaatggctccaactgtttgttccacaacaa |
5821879 |
T |
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| Q |
218 |
ctccagcttctgaataagcaatttgtccacgacttgacattttcgccatcatcattgacataaatccaccaacaatgacaatacatggaatgcatgcaag |
317 |
Q |
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| T |
5821878 |
ctccagcttctgaataagcaatttgtccacgacttgacattttcgccatcatcattgacataaatccaccaacaatgacaatacatggaatgcatgcaag |
5821779 |
T |
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| Q |
318 |
caaaacaagagtgagttcccatccttttgtaaaggcgatcacaaatccaccaagaaaagatgaaataagttgtataaactttccaacctgtcatcaatta |
417 |
Q |
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| T |
5821778 |
caaaacaagagtgagttcccatccttttgtaaaggcgatcacaaatccaccaagaaaagatgaaataagttgtataaactttccaacctgtcatcaatta |
5821679 |
T |
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| Q |
418 |
acttcat |
424 |
Q |
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| T |
5821678 |
acttcat |
5821672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 5833189 - 5833280
Alignment:
| Q |
177 |
tcttactgttctaatggccccaactgtttgttccacaacaactccagcttctgaataagcaatttgtccacgacttgacattttcgccatca |
268 |
Q |
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| T |
5833189 |
tcttactgttctgatggctccaactgtttgatcaacaacgtttcccgcttctgcataagcaatttgtccgcgacttgacattttagccatca |
5833280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 406
Target Start/End: Complemental strand, 5764623 - 5764394
Alignment:
| Q |
177 |
tcttactgttctaatggccccaactgtttgttccacaacaactccagcttctgaataagcaatttgtccacgacttgacattttcgccatcatcattgac |
276 |
Q |
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| T |
5764623 |
tcttactgttctgatggcccctactgtttgatcaacaacatttcctgcttctgaataagcggcttgcccacgagacgacattttggccatcaacatagac |
5764524 |
T |
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| Q |
277 |
ataaatccaccaacaatgacaatacatggaatgcatgcaagcaaaacaagagtgagttcccatccttttgtaaaggcgatcacaaatccaccaagaaaag |
376 |
Q |
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| T |
5764523 |
atgaatccaccaaccacaacaacacaaggtatacatgcaaccaaaactacagctagtctccatccttttatgaaggcaaccgcaaagccaccaaaaaatg |
5764424 |
T |
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| Q |
377 |
atgaaataagttgtataaactttccaacct |
406 |
Q |
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|| | |||||| |||||||| ||||||| |
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| T |
5764423 |
ttgcagcaagttgaataaacttcccaacct |
5764394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 5764801 - 5764714
Alignment:
| Q |
21 |
ccttgttgaactgtacttttataagcaattcttaacttattattgtacttttcagttgctttttcctcaccagtaaaagaggcaacct |
108 |
Q |
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|||||||||||||| | ||||||||| | |||||||| ||||||| |||||| ||||||||| ||| || |||||||| ||||||| |
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| T |
5764801 |
ccttgttgaactgttgtagtataagcaacttttaacttactattgtaattttcaattgcttttttctccccggtaaaagatgcaacct |
5764714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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