View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21524_high_2 (Length: 413)
Name: NF21524_high_2
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 143 - 403
Target Start/End: Complemental strand, 15397017 - 15396769
Alignment:
| Q |
143 |
tgatgatagaaaacagcgatgctagcaatcaggaggtatgttattgaaatatgtttcgctgtaaatagtattagtggtcgagtaaaccacggattaaacc |
242 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
15397017 |
tgatgatagaaaacagtgatgctagcaatcagg---tatgttattgaaatatgtttcgctgtaaatagcattagtggttgagtaaaccaccgattaaacc |
15396921 |
T |
|
| Q |
243 |
ctaaaatgatgaataatatttcatgaataaaacagcatataatatataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgta |
342 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15396920 |
ctaaaatgat---------ttcatgtataaaacagcatatataatataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgta |
15396830 |
T |
|
| Q |
343 |
acaaagcaacaccccatcttgtcaaattctcagcatcatgagggtttttgttgtacctttg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15396829 |
acaaagcaacaccccatcttgtcaaattctcagcatcatgagggtttttgttgtacctttg |
15396769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 15397148 - 15397095
Alignment:
| Q |
14 |
cataataaacaacagtta-ctgttttatttcgatcattcattcatttgtttttc |
66 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15397148 |
cataataaacaacagttagctgttttatttcgatcattcattcatttgtttttc |
15397095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 372
Target Start/End: Complemental strand, 5947250 - 5947166
Alignment:
| Q |
288 |
ataccttgaatggtatgtagcgaatcaggaaaagagtgagcctgagataatcgtaacaaagcaacaccccatcttgtcaaattct |
372 |
Q |
| |
|
||||||| || |||||||| |||||||||||||| ||| || ||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
5947250 |
ataccttcaacggtatgtaatgaatcaggaaaagactgatccgaggataatcgtaacaaagcaacagcccatcgagtcaaattct |
5947166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University