View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21524_high_4 (Length: 259)
Name: NF21524_high_4
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 17314854 - 17315085
Alignment:
| Q |
19 |
aggtgctctttttgtctgtatgacttcatatatatattttaatgagttggtgtaattcattgaatgtatcaaacttttgtaacgtggtttacgttcttct |
118 |
Q |
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| T |
17314854 |
aggtgctctttttatctatataacttcatat--atattttaatgagttggtgtaattcattgactgtatcaaacttttgtaacgtggtttaggttcttct |
17314951 |
T |
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| Q |
119 |
ctaatctattagtatggtaaatatcatttttgcatttcaacatttttgtgtttatctaattgttttgacttaacatgaacatatattaaaacacaaactc |
218 |
Q |
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| T |
17314952 |
ctaatctattagtatggtaaatatcatttttgcatttcaaca--tttgtgtttatctaattgttttgacttaacatgaacatatattaaatcacaaactc |
17315049 |
T |
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| Q |
219 |
atgttttaaacatagaactattctttgtcatctctg |
254 |
Q |
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| T |
17315050 |
atgttttaaacatagaactaatctttgtcatctctg |
17315085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 252
Target Start/End: Complemental strand, 11488378 - 11488215
Alignment:
| Q |
89 |
aaacttttgtaacgtggtttacgttcttctctaatctattagtatggtaaatatcatttttgcatttcaacatttttgtgtttatctaattgttttgact |
188 |
Q |
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| T |
11488378 |
aaactattgcaatgtggtttaggttcttatttaatctattagtatagtaaatatcatttttgcatttccacatttttgtgtttatctaactgttttgact |
11488279 |
T |
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| Q |
189 |
taacatgaacatatattaaaacacaaactcatgttttaaacatagaactattctttgtcatctc |
252 |
Q |
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| T |
11488278 |
taacatcagcatatattaaaaaacaaactcatgttttaaacatcgaactattctttgtcatctc |
11488215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 3872944 - 3872996
Alignment:
| Q |
138 |
aatatcatttttgcatttcaacatttttgtgtttatctaattgttttgacttaa |
191 |
Q |
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| T |
3872944 |
aatatcatttatgcatttccacatttt-gtgtttatctaactgtcttgacttaa |
3872996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 11494240 - 11494198
Alignment:
| Q |
25 |
tctttttgtctgtatgacttcatatatatattttaatgagttggt |
69 |
Q |
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| T |
11494240 |
tctttttgtctatatgacttcatat--atattttaatgagttggt |
11494198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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