View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21524_high_9 (Length: 241)
Name: NF21524_high_9
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 3233666 - 3233877
Alignment:
| Q |
15 |
tactatgaacagagaaa-aaattagattcaacaatgataataagagcatgtaccacaaaacacatagagatggcaaattttaactaacaagaataaaaat |
113 |
Q |
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| T |
3233666 |
tactatgaacagagaaataaattagattcaacaatgataataagagcatgtaccacaaaacacatagagatggcaaattttaactaacaagaataaaaat |
3233765 |
T |
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| Q |
114 |
aaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattctcttccaccctcaagtacggcacaccgtgttttgaggt |
213 |
Q |
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| T |
3233766 |
aaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattctcttccaccctcaagtacggcacaccgtgttttgaggt |
3233865 |
T |
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| Q |
214 |
aatgtctgtttt |
225 |
Q |
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|||||| ||||| |
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| T |
3233866 |
aatgtccgtttt |
3233877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 3228538 - 3228654
Alignment:
| Q |
105 |
aataaaaataaattaaaacgattcttgctcaacaaatcagtgtagacatgcacgaactagttaaactattct-------cttccaccctcaagtacggca |
197 |
Q |
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||||||||||||||||||||||||| ||| |||||||| ||||| |||||| ||||| |||||||||| | |||||||||||||||||| |
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| T |
3228538 |
aataaaaataaattaaaacgattctcactcgtcaaatcagagtagaaatgcacaaactatttaaactatttttttccactttccaccctcaagtacggtg |
3228637 |
T |
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| Q |
198 |
caccgtgttttgaggta |
214 |
Q |
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| T |
3228638 |
caccgtgttttgaggta |
3228654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 21159853 - 21159901
Alignment:
| Q |
173 |
ttctcttccaccctcaagtacggcacaccgtgttttgaggtaatgtctg |
221 |
Q |
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| T |
21159853 |
ttctgttccaccctcaagtatgtcacaccgtgttttgaggtattgtctg |
21159901 |
T |
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