View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21524_low_12 (Length: 213)
Name: NF21524_low_12
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 7901984 - 7901806
Alignment:
| Q |
22 |
taagtgtgttcatgataataaagtggagaattattctatcacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttg |
121 |
Q |
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| T |
7901984 |
taagtgtgttcatgataataaagaggagaattattctatcacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttg |
7901885 |
T |
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| Q |
122 |
taaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatttattttgttggttctagagaaaatat |
200 |
Q |
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| T |
7901884 |
taaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatttattttgttggttcttgagaaaatat |
7901806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 24843689 - 24843835
Alignment:
| Q |
38 |
aataaagtggagaattattctatcacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagatta |
137 |
Q |
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| T |
24843689 |
aataaagcggatagttattctctcacctatattatgttgttctttaaagtttgttggattattgtgtatgtttaaattgagttct-aggctctgatgttg |
24843787 |
T |
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| Q |
138 |
tgacatcatgcccgagtttaataatatggtctcgatttattttgttgg |
185 |
Q |
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| T |
24843788 |
tgacattaggaccgagtttaataatatgtacttgacttattttgttgg |
24843835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 16652478 - 16652567
Alignment:
| Q |
75 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatg |
165 |
Q |
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| T |
16652478 |
tgttctttaaagtttgttggattattgtttatgtttaaattgagttct-aggctctgatattgtgacatcagggttgagtttaataatatg |
16652567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 24754891 - 24755016
Alignment:
| Q |
75 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatt |
174 |
Q |
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| T |
24754891 |
tgttctttaaagtttggtggattgttgtttatatttaaattgagtttta-ggctctgatattgtaacatcaggaccgaatttaataatatgttcttgact |
24754989 |
T |
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| Q |
175 |
tattttgttggttctagagaaaatatt |
201 |
Q |
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| T |
24754990 |
ttttttcttggatcttgagaaaatatt |
24755016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 24760355 - 24760480
Alignment:
| Q |
75 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatt |
174 |
Q |
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| T |
24760355 |
tgttctttaaagtttgttggattattgtttatgtttaaattgagttct-atcctctgatattgtgacatcagtattgagtttaataatatgctcttgtct |
24760453 |
T |
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| Q |
175 |
tattttgttggttctagagaaaatatt |
201 |
Q |
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| T |
24760454 |
tattttcttggatcttgagaaaatatt |
24760480 |
T |
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