View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21524_low_6 (Length: 248)
Name: NF21524_low_6
Description: NF21524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21524_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 31988080 - 31987849
Alignment:
| Q |
17 |
aagactttggaggagatggagactctttttaccnnnnnnnntaaaagtggtaaaagtgttgccatggaaacatatccaacacaatagaccttagtaagtt |
116 |
Q |
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| T |
31988080 |
aagactttggaggagatggagactctttttaccaaaaaaaataaaagtggtaaaagtgttgccatggaaacatatccaacacaatagaccttagtaagtt |
31987981 |
T |
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| Q |
117 |
caaaaatgtaaaaaatctttacatgacattatgttctttttcctcaaaatattgatctctttttgttgttgtttgtgaagtaatttaatcacttggtgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31987980 |
caaaaatgtaaaaaatctttacatgacattatgttctttttcctcaaaatattgatctctttttgttgttgtttgtgaagtaatttaatcacttggtgtg |
31987881 |
T |
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| Q |
217 |
tttatcgttttagacttatttcactattgttt |
248 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
31987880 |
tttatcgttttagacttatttcaatattgttt |
31987849 |
T |
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