View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21525_high_1 (Length: 646)

Name: NF21525_high_1
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21525_high_1
NF21525_high_1
[»] chr8 (2 HSPs)
chr8 (28-178)||(12933811-12933961)
chr8 (118-155)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (28-178)||(14177081-14177231)
chr4 (28-178)||(28608644-28608794)
chr4 (117-170)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (148-185)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (148-185)||(796698-796735)
chr6 (148-185)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (148-185)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
Q  28 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 126  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  12933961 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 12933863  T
Q  127 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 178  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933862 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  118 ggttgctccatataaatctcctcttccaaatctccatg 155  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  28 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 126  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  127 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 178  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
Q  28 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 126  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  ||    
T  28608644 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc 28608742  T
Q  127 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 178  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608743 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  117 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 170  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  148 tctccatgaagaaatgcagttttcacatccaactgctc 185  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  148 tctccatgaagaaatgcagttttcacatccaactgctc 185  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  148 tctccatgaagaaatgcagttttcacatccaactgctc 185  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  148 tctccatgaagaaatgcagttttcacatccaactgctc 185  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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