View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21525_high_17 (Length: 335)
Name: NF21525_high_17
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21525_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 13879386 - 13879691
Alignment:
| Q |
3 |
tcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagt |
102 |
Q |
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| T |
13879386 |
tcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagt |
13879485 |
T |
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| Q |
103 |
gcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttc |
202 |
Q |
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| T |
13879486 |
gcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttc |
13879585 |
T |
|
| Q |
203 |
cttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgttgttgttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
13879586 |
cttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatcgttgttg |
13879685 |
T |
|
| Q |
303 |
ttgttg |
308 |
Q |
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|||||| |
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| T |
13879686 |
ttgttg |
13879691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 13875172 - 13875461
Alignment:
| Q |
6 |
tcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgct |
105 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||| |
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| T |
13875172 |
tcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgct |
13875271 |
T |
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| Q |
106 |
tccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttcctt |
205 |
Q |
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|||||||||||| ||||| ||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13875272 |
tccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttcctt |
13875371 |
T |
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| Q |
206 |
cctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
295 |
Q |
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||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| || |||||||| |
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| T |
13875372 |
cctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
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