View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21525_high_19 (Length: 333)
Name: NF21525_high_19
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21525_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 48117471 - 48117146
Alignment:
| Q |
8 |
aagcagagagatatatagaaatcatgaaaattggtaatctctggaaattgtcccacatgccgaatgttgaaataagatttctgaaaacagccataacaag |
107 |
Q |
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| T |
48117471 |
aagcagagagatatatagaaatcatgaaaattggtaatctctggaaattgtcccacatgccgaatgttgaaataagatttctgaaaacagccataacaag |
48117372 |
T |
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| Q |
108 |
cttaccaaatattggctacagtttgaaattatgaagctaagagtgcttccagctttgcaatctgatcatcctcattctttggaatagaatctttgttaac |
207 |
Q |
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| T |
48117371 |
cttaccaaatattggctacagtttgaaattatgaagctaagagtgcttccagctttgcaatctgatcatcctcattctttggaatagaatctttgttaac |
48117272 |
T |
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| Q |
208 |
ctcttgatacaaatcatgtttccacttctctgtttgagtcttaataggatgattatcttgtcttccattaaatttgtctcttcctctgtgattgctattg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48117271 |
ctcttgatacaaatcatgtttccacttctctgtttgagtcttaataggatgattatcttgtcttccattaaatttgtctcttcctctgtgattgctattg |
48117172 |
T |
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| Q |
308 |
cctccacttcctccataccttactct |
333 |
Q |
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| T |
48117171 |
cctccacttcctccataccttactct |
48117146 |
T |
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