View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21525_high_23 (Length: 322)

Name: NF21525_high_23
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21525_high_23
NF21525_high_23
[»] chr3 (2 HSPs)
chr3 (55-283)||(46763243-46763465)
chr3 (55-278)||(35764087-35764309)
[»] chr4 (2 HSPs)
chr4 (55-282)||(6234149-6234375)
chr4 (55-283)||(37715789-37716021)
[»] chr2 (1 HSPs)
chr2 (55-282)||(21271079-21271300)
[»] chr1 (4 HSPs)
chr1 (55-199)||(43590285-43590423)
chr1 (77-260)||(42759277-42759461)
chr1 (55-115)||(8266343-8266403)
chr1 (227-282)||(43590226-43590281)
[»] chr7 (1 HSPs)
chr7 (237-286)||(24857351-24857400)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 55 - 283
Target Start/End: Complemental strand, 46763465 - 46763243
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgctcggtccttttatggttctatctt 154  Q
    ||||||||||||||||||| |||||||     ||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||||| ||||||    
T  46763465 atatgtatatagcatttgcagttaact-----aattaattaataataaacaaagtcaaaatatgttactgcaccgcttggtccttt-atggttttatctt 46763372  T
Q  155 tgggtcatgtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgcagctgcatc 254  Q
    || |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  46763371 tgagtcaggtggtgcagatctcaaatatgaggggattcataatcatatgagatagaaaatttggtacaaatctcacaatttcaggggatgcagctgcatc 46763272  T
Q  255 ctctcaactgtatgtggctccgccactga 283  Q
    |||||| ||||| ||||||||||||||||    
T  46763271 ctctcagctgtacgtggctccgccactga 46763243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 55 - 278
Target Start/End: Complemental strand, 35764309 - 35764087
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgctcggtccttttatggttctatctt 154  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||| ||||||| || | |||||||| |||||| ||||||    
T  35764309 atatgtatatagcatttgccgttaactgatttaattaattaataataaacaaagtcaaaatatgttactgcatcgtttggtccttt-atggttttatctt 35764211  T
Q  155 tgggtcatgtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgcagctgcatc 254  Q
    || |||| |||||||||||||||||||||||  |||||||||||| || ||||| |||| ||||| ||||||||||||||| ||||||||||||||||||    
T  35764210 tgagtcaggtggtgcagatctcaaatatgagaagattcataatcatatgagataaaaaaattggtacaaatctcacaatttcaggggatgcagctgcatc 35764111  T
Q  255 ctctcaactgtatgtggctccgcc 278  Q
    |||||| ||||| |||||||||||    
T  35764110 ctctcagctgtacgtggctccgcc 35764087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 6234375 - 6234149
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgctcggtccttttatggttctatctt 154  Q
    |||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||| | ||| |||||||||||| | |||||| |||||| ||||||    
T  6234375 atatgtatatggcatttgccgttaattgatttaattaattaataataagcaaagtcaacatatgttactgcaccgcttgatccttt-atggttttatctt 6234277  T
Q  155 tgggtcatgtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgcagctgcatc 254  Q
    || |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6234276 tgagtcaggtggtgcagatctcaaatatgaggggtttcataatcacatgagatagaaaatttgatgcaaatctcacaatttcaggggatgcagctgcatc 6234177  T
Q  255 ctctcaactgtatgtggctccgccactg 282  Q
    |||||  ||||| ||||||||| |||||    
T  6234176 ctctcggctgtacgtggctccgtcactg 6234149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 55 - 283
Target Start/End: Original strand, 37715789 - 37716021
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtca---aaacatgctactgcacc------gctcggtccttttatgg 145  Q
    ||||||||||||||||||  |||||| ||||  |||||||||||||||||||||||    ||||||| |||||||||      ||||| ||||   ||||    
T  37715789 atatgtatatagcatttgtagttaacagatg--atcaattaataataagcaaagtcgtccaaacatgttactgcacccgcaccgctcgatcct---atgg 37715883  T
Q  146 ttctatctttgggtcatgtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgc 245  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  37715884 ttctatctttgagttaggtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaacttggtgcaaatctcacaatttcaggggatgc 37715983  T
Q  246 agctgcatcctctcaactgtatgtggctccgccactga 283  Q
    ||||||||||||||| || |||||||||||||||||||    
T  37715984 agctgcatcctctcagctatatgtggctccgccactga 37716021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 21271300 - 21271079
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgctcggtccttttatggttctatctt 154  Q
    |||||||||||||||||||||||||||     ||| |||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||||| ||||||    
T  21271300 atatgtatatagcatttgccgttaact-----aattaattaataataaacaaagtcaaaatatgttactgcaccgcttggtccttt-atggttttatctt 21271207  T
Q  155 tgggtcatgtggtgcagatctcaaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgcagctgcatc 254  Q
    || |||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  21271206 tgagtcaggtggtgcaaatctcaaatatgaggggattcataatcatatgagatagaaaatttggtacaaatctcacaatttcaggggatgcagctgcatc 21271107  T
Q  255 ctctcaactgtatgtggctccgccactg 282  Q
    |||||| ||||| |||||||||||||||    
T  21271106 ctctcagctgtacgtggctccgccactg 21271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 43590423 - 43590285
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgctcggtccttttatggttctatctt 154  Q
    ||||||||||| |||||||||||||||     ||| |||||||||||| ||||||||||| ||| ||||||| || | |||||||| |||||| ||||||    
T  43590423 atatgtatataacatttgccgttaact-----aattaattaataataaacaaagtcaaaatatgttactgcaacgattggtccttt-atggttttatctt 43590330  T
Q  155 tgggtcatgtggtgcagatctcaaatatgaggggattcataatca 199  Q
    || |||| |||||||||||||||||||||||||||||||||||||    
T  43590329 tgagtcaggtggtgcagatctcaaatatgaggggattcataatca 43590285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 42759461 - 42759277
Alignment:
Q  77 taactgatgtaatcaattaataataagcaaagtcaaaacatgctactgcaccgc-tcggtccttttatggttctatctttgggtcatgtggtgcagatct 175  Q
    |||| |||||||| ||||| ||||||| ||||||||||| || ||| ||||  | || |||||| ||||||| |||| |||||||   || |||||||||    
T  42759461 taacagatgtaattaattagtaataagaaaagtcaaaacgtgttaccgcactacatcagtccttctatggttttatccttgggtctgatgatgcagatct 42759362  T
Q  176 caaatatgaggggattcataatcacataagatagaaaatttggtgcaaatctcacaattttaggggatgcagctgcatcctctca 260  Q
    ||||||  ||||||||| || |  |||  |||||||||||||| | |||||||||||||||| ||||||||||  ||||||||||    
T  42759361 caaatacaaggggattcttagtgtcatgtgatagaaaatttggcggaaatctcacaattttaagggatgcagcgccatcctctca 42759277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 8266343 - 8266403
Alignment:
Q  55 atatgtatatagcatttgccgttaactgatgtaatcaattaataataagcaaagtcaaaac 115  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  8266343 atatgtatatagcatttgtagttaactaatgtaatcaattaataataagcaaagtcaaaac 8266403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 43590281 - 43590226
Alignment:
Q  227 tcacaattttaggggatgcagctgcatcctctcaactgtatgtggctccgccactg 282  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  43590281 tcacaatttcaggggatgcagctgcatcctctcagctgtacgtggctccgtcactg 43590226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 24857351 - 24857400
Alignment:
Q  237 aggggatgcagctgcatcctctcaactgtatgtggctccgccactgactg 286  Q
    |||||||||| |||||||| ||||  ||||||||||||||||||||||||    
T  24857351 aggggatgcatctgcatcccctcacttgtatgtggctccgccactgactg 24857400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University