View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21525_high_27 (Length: 309)
Name: NF21525_high_27
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21525_high_27 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 54578137 - 54578313
Alignment:
| Q |
133 |
ttaatctctatcaatctctattccagcatttagcaattttagcattcaacaaaaatcagccaattccatgaaaggaagtaaaagaaatcaacgaaagaga |
232 |
Q |
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| T |
54578137 |
ttaatctatatcaatctctattccagcatttagcaattttaacattcaacaaaaatcagccaattccatgaaaggacgtaaaagaaatcaacgaaagaga |
54578236 |
T |
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| Q |
233 |
ggttatttacctaacagagtaacagtgtcagttttgttttggaaaggggaaaacgtcaataggatggttgttgatga |
309 |
Q |
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| T |
54578237 |
ggttatttacctaacagagtaatagtgtcagtgttgttttgaaaaggggaaaacgtcaataggatggtcgatgatga |
54578313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 54577951 - 54578042
Alignment:
| Q |
11 |
cagagaataaccaaaatcttataagattagaaagagaacagtgtcaatgttgttttggaaaggggaaaacgttaatctatatttgaacttgt |
102 |
Q |
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| T |
54577951 |
cagagaataaccaaaaacttataaaattagaaacagaacagtgtcagtgttgttttggaaaggggaaaacgttaatctctatttgaacttgt |
54578042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 54577987 - 54578022
Alignment:
| Q |
253 |
aacagtgtcagttttgttttggaaaggggaaaacgt |
288 |
Q |
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| T |
54577987 |
aacagtgtcagtgttgttttggaaaggggaaaacgt |
54578022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 38067005 - 38067181
Alignment:
| Q |
133 |
ttaatctctatcaatctctattccagcatttagcaattttagcattcaacaaaaatcagccaattccatgaaaggaagtaaaagaaatcaacgaaagaga |
232 |
Q |
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| T |
38067005 |
ttaatctctatcaatcgctattccaacatttagcaattttaacattcaataaaaatcagccaattccatgaaaggaagtaaaataaatcaatgaaagaga |
38067104 |
T |
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| Q |
233 |
ggttatttacctaacagagtaacagtgtcagttttgttttggaaaggggaaaacgtcaataggatggttgttgatga |
309 |
Q |
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| T |
38067105 |
ggttatttacctaagggagtaacagtgtcagtgttgttttggaaaggggaaaacatcaataggatggtcgatgatga |
38067181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 38066774 - 38066882
Alignment:
| Q |
11 |
cagagaataaccaaaatcttataagattagaaagagaacagtgtcaatgttgttttggaaaggggaaaacgttaatctatatttgaacttgtataactta |
110 |
Q |
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|||||||||| ||||| ||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
38066774 |
cagagaataatcaaaaacttataaaattaggaacagaacagtgtcagtgttgttttggaaaggggaaaacgttaatctctatttgaacttctataactta |
38066873 |
T |
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| Q |
111 |
taaaattat |
119 |
Q |
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||||||||| |
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| T |
38066874 |
taaaattat |
38066882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 38066810 - 38066845
Alignment:
| Q |
253 |
aacagtgtcagttttgttttggaaaggggaaaacgt |
288 |
Q |
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| T |
38066810 |
aacagtgtcagtgttgttttggaaaggggaaaacgt |
38066845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 38067125 - 38067158
Alignment:
| Q |
47 |
aacagtgtcaatgttgttttggaaaggggaaaac |
80 |
Q |
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| T |
38067125 |
aacagtgtcagtgttgttttggaaaggggaaaac |
38067158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 133 - 309
Target Start/End: Complemental strand, 182100 - 181925
Alignment:
| Q |
133 |
ttaatctctatcaatctctattccagcatttagcaattttagcattcaacaaaaatcagccaattccatgaaaggaagtaaaagaaatcaacgaaagaga |
232 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
182100 |
ttaatctctatcaatctctattcaagcatttaacaattttaacattcaacaaaaatcagccaattccatgaaaggaagtaaaagaaatcaaagaaagaga |
182001 |
T |
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| Q |
233 |
ggttatttacctaacagagtaacagtgtcagttttgttttggaaaggggaaaacgtcaataggatggttgttgatga |
309 |
Q |
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| T |
182000 |
ggttatttacctaagggagtaataatgtcagtgttattttggaaa-gggaaaacgtcaataggatggtcgatgatga |
181925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 182331 - 182222
Alignment:
| Q |
11 |
cagagaataaccaaaatcttataagattagaaagagaacagtgtcaatgttgttttggaaaggggaaaacgttaatctatatttgaacttgtataactta |
110 |
Q |
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||||||||||| |||| ||||||| |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||| |||||||| || ||||||||| |
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| T |
182331 |
cagagaataacaaaaaacttataaaattagaaacagaatagtgtcagtgttgttttggaaagggaaaaacgttaatctctatttgaatttctataactta |
182232 |
T |
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| Q |
111 |
taaaattata |
120 |
Q |
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|||||||||| |
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| T |
182231 |
taaaattata |
182222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 40445403 - 40445322
Alignment:
| Q |
161 |
tttagcaattttagcattcaacaaaaatcagccaattccatgaaaggaagtaaaagaaatcaacgaaagagaggttatttac |
242 |
Q |
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||||||||||| | |||||||||||||||| |||||| || |||||||||||||| |||| || |||||||||||||||||| |
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| T |
40445403 |
tttagcaatttcaacattcaacaaaaatcatccaatttcaagaaaggaagtaaaataaattaatgaaagagaggttatttac |
40445322 |
T |
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