View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21525_high_6 (Length: 425)
Name: NF21525_high_6
Description: NF21525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21525_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 20670464 - 20670867
Alignment:
| Q |
1 |
cactcatcatgttcacaacctccacaacatgcagtaacaccacaacaaaccctatcagca-ctatgcaatgagatggacatcatcaactccaccattggc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||| | | ||||||||||||||||||||||| |
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| T |
20670464 |
cactcatcatgttcacaacctccacaacatgcagtaacaccacaacaaaccctatcaacaacaactcaacaaca---acatcatcaactccaccattggc |
20670560 |
T |
|
| Q |
100 |
aatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatctcacatccatcactt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20670561 |
aatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatctcccatccatcactt |
20670660 |
T |
|
| Q |
200 |
agcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaacgtctcgtctaca |
299 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670661 |
agcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctcaacgtctcgtctacg |
20670760 |
T |
|
| Q |
300 |
ctgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttga |
399 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670761 |
ctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccggtaatttcacccttga |
20670860 |
T |
|
| Q |
400 |
tgatgtc |
406 |
Q |
| |
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||||||| |
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| T |
20670861 |
tgatgtc |
20670867 |
T |
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