View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_high_14 (Length: 331)
Name: NF21526_high_14
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 35135852 - 35135549
Alignment:
| Q |
13 |
aaaatagtactattggcaatggcattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattc |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35135852 |
aaaatagtactattggcaatgggattggcaaccatagccaagttgacatcacaagcagcaaggtaagctccccttttttgcaatgtggcaactcaaattc |
35135753 |
T |
|
| Q |
113 |
aaagcaaagcacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagg |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35135752 |
aaagcaaagtacaccaacattagaagatcttatactacaattagaaatggaggaagagatggcaaggaaagaaaaactcaatgaatatagtggaataagg |
35135653 |
T |
|
| Q |
213 |
ggaaggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35135652 |
ggaaggatgtcatgtgttaacaactctgacatattaagatctgcaaggaatgctttgaatcaatacccaaggttttcacttgatggaagagattccatgt |
35135553 |
T |
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| Q |
313 |
atag |
316 |
Q |
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|||| |
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| T |
35135552 |
atag |
35135549 |
T |
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