View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_high_15 (Length: 317)
Name: NF21526_high_15
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 7582469 - 7582188
Alignment:
| Q |
17 |
aatatattgcatccagccattgcaaagtataaaataaattaaggaatacaatatttaacacaatctttcaaattttgcttgaatgaaaatgtaataggcg |
116 |
Q |
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| T |
7582469 |
aatatattgcatccagccattgcaaagtataaaataaattaaggaatacaatatttaacacaatctttcaaattttgcttgaatgaaaatgtaataggcg |
7582370 |
T |
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| Q |
117 |
accatatcacacctaagattgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtg |
216 |
Q |
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| T |
7582369 |
accatatcacacctaagattgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtg |
7582270 |
T |
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| Q |
217 |
atacatagaagagaaaatatctctaataatctttcaaagaaacaaaaacaaaatgcaatgcatttccaattaaaaatcatag |
298 |
Q |
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| T |
7582269 |
atacatagaagagaaaatatctctaataatctttcaaagaaacaaaaacaaaaggcaatgcatttccaattaaaaatcatag |
7582188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 7572172 - 7572078
Alignment:
| Q |
134 |
attgagtacaaagattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtgatacatagaaga |
228 |
Q |
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| T |
7572172 |
attgagtgcaaagattttcaaaccccatatactcatgattttccaacttcacaatcatgttctgaattcctactccacctgtgatacataaaaga |
7572078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 7572317 - 7572234
Alignment:
| Q |
45 |
ataaaataaattaaggaatacaatatttaacacaatc-tttcaaattttgcttgaatgaaaatgtaataggcgaccatatcaca |
127 |
Q |
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| T |
7572317 |
ataaaataaattaaggaatacaatatttaacacaatcttttccaaatttgcttgaatgaaaatggaataggtgacgatatcaca |
7572234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 33123393 - 33123466
Alignment:
| Q |
145 |
agattttcaaaccccatatactcatgattttccatcttcacaatcattttctctattcctactccacctgtgat |
218 |
Q |
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| T |
33123393 |
agattgtcaaaccccatatattcttcattttccatcttctcaaccatattccctattcccaccccacctgtgat |
33123466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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