View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_high_16 (Length: 289)
Name: NF21526_high_16
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 35109018 - 35109271
Alignment:
| Q |
17 |
caaaggagacaaaagatataaggatgtaaaacattgtgattggagaggattatatatcaaaagtgttattagagaggaaacaagatccaccaatggaaga |
116 |
Q |
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| T |
35109018 |
caaaggagacaaaagatataaggatgtaaaacattgtgatcggagaggattatatatcaaaagtgttattagagaggaaacaagatccaccaatggaaga |
35109117 |
T |
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| Q |
117 |
tgagactagtggtttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacacaaccgacaagcttacaaaacaaacatcatcaaagtat |
216 |
Q |
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| T |
35109118 |
tgagactagtggtttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacacaaccgacaagcttacaaaacaaacatcatcaaagtat |
35109217 |
T |
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| Q |
217 |
gatccttnnnnnnntgttttaagcatcatcatatatagtgatttaacacaaaac |
270 |
Q |
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| T |
35109218 |
gatccttaaaaaaatgttttaagcatcatcatatatagtgatttaacacaaaac |
35109271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 35068713 - 35068827
Alignment:
| Q |
82 |
ttattagagaggaaa-caagatccaccaatggaagatgagactagtggtttggcaaaacctatggtttttgtcttgagaaggacttatgtagactacaca |
180 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35068713 |
ttattagagacgaaaacaagatccaccaatggaagatgagagtagtggtttggcaaaaccaatggtttttgtcttgagaaggacttatgtagactacaca |
35068812 |
T |
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| Q |
181 |
accgacaagcttaca |
195 |
Q |
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| T |
35068813 |
accgacaagcttaca |
35068827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 35068585 - 35068647
Alignment:
| Q |
17 |
caaaggagacaaaagatataaggatgtaaaacattgtgattggagaggattatatatcaaaag |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068585 |
caaaggagacaaaagatataaggatgtaaaacattgtgattggagaggattatatatcaaaag |
35068647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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