View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21526_high_9 (Length: 421)

Name: NF21526_high_9
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21526_high_9
NF21526_high_9
[»] chr3 (40 HSPs)
chr3 (18-421)||(11228531-11228934)
chr3 (160-421)||(11227985-11228246)
chr3 (160-421)||(11228219-11228480)
chr3 (160-421)||(11228375-11228636)
chr3 (160-421)||(11228141-11228402)
chr3 (160-421)||(11227907-11228168)
chr3 (176-421)||(11241140-11241385)
chr3 (98-288)||(54460031-54460221)
chr3 (162-288)||(11241507-11241633)
chr3 (160-393)||(11227857-11228090)
chr3 (160-370)||(54459100-54459310)
chr3 (246-421)||(54469061-54469236)
chr3 (160-421)||(54459127-54459388)
chr3 (180-288)||(11241585-11241693)
chr3 (158-421)||(11240984-11241247)
chr3 (176-421)||(11240672-11240917)
chr3 (330-421)||(54459820-54459911)
chr3 (160-421)||(11240750-11241011)
chr3 (160-417)||(11241066-11241323)
chr3 (155-371)||(54459477-54459693)
chr3 (198-418)||(54469142-54469362)
chr3 (330-421)||(11241296-11241387)
chr3 (256-370)||(54459793-54459907)
chr3 (180-371)||(11240488-11240679)
chr3 (330-421)||(54459505-54459596)
chr3 (256-421)||(54468980-54469148)
chr3 (306-421)||(11240516-11240631)
chr3 (258-421)||(11240594-11240757)
chr3 (18-113)||(11241740-11241834)
chr3 (273-416)||(49745049-49745192)
chr3 (240-418)||(11240909-11241087)
chr3 (153-288)||(54459797-54459932)
chr3 (330-421)||(54468746-54468837)
chr3 (356-421)||(54468824-54468889)
chr3 (162-214)||(11240489-11240541)
chr3 (66-133)||(49743917-49743985)
chr3 (160-215)||(54459099-54459154)
chr3 (330-421)||(54459583-54459674)
chr3 (160-215)||(54459792-54459847)
chr3 (273-421)||(54468902-54469050)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 11228934 - 11228531
Alignment:
Q  18 aacatgaagctgcaacgacttatttaaatatgttacatcacatattgaagttgcattctatttcattattacatttaatgatcagatttagtgacacttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11228934 aacatgaagctgcaacgacttatttaaatatgttacatcacatattgaagttgcattctatttcattattacatttaatgatcagatttagtgacacttg 11228835  T
Q  118 gcttgggttcaaaatcgtttgtgaattcctcattcttatcagcatcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  11228834 gcttgggttcaaaatcgtttgtgaattcctcattcttatcagcatcaatgtcgttgtttccataacccgaaatattaggccttggttcaaaatctttggc 11228735  T
Q  218 agctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaaca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11228734 agctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttggttcaaaaattttagtggctccattgttttccttaaca 11228635  T
Q  318 tcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11228634 tcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataag 11228535  T
Q  418 ctga 421  Q
    ||||    
T  11228534 ctga 11228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11228246 - 11227985
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||| ||||| |||| ||||||||| ||||| ||||| | ||||||||||||||| ||||||  || |||||| ||    || ||||||||||   ||||    
T  11228246 catctatgtcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagcagctcccttcttttcattcacatctatgtcattgtctccata 11228147  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    |||||||||||| ||||||| |||||||| |||||||||||| || |||||||| |||||||| || || ||||||||||| ||||||||||||| ||||    
T  11228146 agctgaaatgtttggtcttggttcaaaatctttagtggctcccttcttttccttgacatcaatatcattgtctccataagctgaaatgttgggtcttggt 11228047  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11228046 tcaaaatctttagcggctcccttcttttctttaacatcaatctcattgtctccataagctga 11227985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11228480 - 11228219
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||| ||||| |||| ||||||||| ||||| ||||| | ||||||||||||||| ||||||  || |||||| ||    || ||||||||||   ||||    
T  11228480 catctatgtcattgtctccataagctgaaatgttgggtcgtggttcaaaatctttagcagctcccttcttttcattcacatctatgtcattgtctccata 11228381  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    |||||||||||| |||| || |||||||| |||||||||||| || |||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  11228380 agctgaaatgtttggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctgaaatgttgggtcgtggt 11228281  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  11228280 tcaaaatctttagtagctcccttcttttcattaacatctatgtcattgtctccataagctga 11228219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11228636 - 11228375
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    ||||||| ||||| | ||||||||||||||| ||||| | ||||||||||||||| |  |||  || ||||||||||   ||||| |||||||   ||||    
T  11228636 catcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccata 11228537  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    ||||||||||||||||| || |||||||| |||||| ||||| || ||||| |||||||| || || || ||||||||||| ||||||||||||||||||    
T  11228536 agctgaaatgttgggtcgtggttcaaaatctttagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatgttgggtcgtggt 11228437  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||||  |||||||||||||| || ||||| || ||||||||||||||||||||    
T  11228436 tcaaaatctttagcagctcccttcttttcattcacatctatgtcattgtctccataagctga 11228375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11228402 - 11228141
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||| ||||| |||| ||||||||| ||||| || || | ||||||||||||||| |  |||  || ||||||||||   ||||| |||||||   ||||    
T  11228402 catctatgtcattgtctccataagctgaaatgtttggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccata 11228303  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    ||||||||||||||||| || |||||||| |||||| ||||| || ||||| |||||||| || || || ||||||||||| ||||||||||||||||||    
T  11228302 agctgaaatgttgggtcgtggttcaaaatctttagtagctcccttcttttcattaacatctatgtcattgtctccataagctgaaatgttgggtcgtggt 11228203  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||||  |||||||||||||| || ||||| || ||||||||||||||||||||    
T  11228202 tcaaaatctttagcagctcccttcttttcattcacatctatgtcattgtctccataagctga 11228141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11228168 - 11227907
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||| ||||| |||| ||||||||| ||||| || || ||||||||||||||||| |  |||  || |||||||||    ||||| |||||||   ||||    
T  11228168 catctatgtcattgtctccataagctgaaatgtttggtcttggttcaaaatctttagtggctcccttcttttccttgacatcaatatcattgtctccata 11228069  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    |||||||||||||||||||| |||||||| ||||| |||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||||  |||    
T  11228068 agctgaaatgttgggtcttggttcaaaatctttagcggctcccttcttttctttaacatcaatctcattgtctccataagctgaaatgttgggtctaggt 11227969  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| ||||| ||||| ||||||||    
T  11227968 tcaaaatctttagtgtctccattcttttccgtagcattaatgtcattatctccgtaagctga 11227907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 421
Target Start/End: Complemental strand, 11241385 - 11241140
Alignment:
Q  176 tccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggt 275  Q
    ||||||||| ||||| ||||| |||||||| |||||||||   |||  ||||||||  |||   |||||||||||||   |||||||||||||||| |||    
T  11241385 tccataagctgaaatgttgggtcttggttcgaaatctttgatggctccctcctttttattaacatcaatgtcattgtctccataagctgaaatgtttggt 11241286  T
Q  276 cttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtgg 375  Q
    |||| ||||||||  |||||||||||  | ||||||||| |||||||  | || |||||||||||||||||||||||||||||||||||||| |||  ||    
T  11241285 cttggttcaaaatcattagtggctcccctcttttccttagcatcaatggcattgtctccataagccgaaatgttgggtcgtggttcaaaatccttaccgg 11241186  T
Q  376 ctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    || |||||||||| | |||||| || ||||| | ||||||||||||    
T  11241185 ctgccttcttttcatgaacatcgatgtcattctttccataagctga 11241140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 54460221 - 54460031
Alignment:
Q  98 atcagatttagtgacacttggcttgggttcaaaatcgtttgtgaattcctcattcttatcagcatcaatgtcgttgtttccataagccgaaatattgggc 197  Q
    |||| |||||||||| |||||| || |||||||||| |||||||| || ||||  || ||||||||||||  ||||| | | ||||| |||||| ||||     
T  54460221 atcatatttagtgactcttggcatgcgttcaaaatcctttgtgaactcgtcatctttctcagcatcaatgatgttgtcttcctaagctgaaataatgggt 54460122  T
Q  198 cttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttgattcaaaat 288  Q
    ||| |||||||||||||||||||||| || |||| |||||||||||  ||||||||| | |||||||||||||||||||||||||||||||    
T  54460121 ctttgttcaaaatctttggcagctttttcttttttcttagtgtcaacttcattgttaccgtaagctgaaatgttgggtcttgattcaaaat 54460031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 11241633 - 11241507
Alignment:
Q  162 tcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataag 261  Q
    ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||||    
T  11241633 tcaatatcattgttgccataagctgaaatatttggccttggttcaaaatctttggcagctttctccttttccttggtgtcaatatcattgttgccataag 11241534  T
Q  262 ctgaaatgttgggtcttgattcaaaat 288  Q
    |||||||||| ||||||| ||||||||    
T  11241533 ctgaaatgtttggtcttggttcaaaat 11241507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 393
Target Start/End: Complemental strand, 11228090 - 11227857
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    ||||||| || |||| ||||||||| ||||| ||||| ||||||||||||||||| || |||  || |||||| |||   ||||| |||||||   ||||    
T  11228090 catcaatatcattgtctccataagctgaaatgttgggtcttggttcaaaatctttagcggctcccttcttttctttaacatcaatctcattgtctccata 11227991  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    |||||||||||||||||| | |||||||| ||||||| ||||||| |||||| || ||| ||| || |||||||| ||||| ||||||||||| | || |    
T  11227990 agctgaaatgttgggtctaggttcaaaatctttagtgtctccattcttttccgtagcattaatgtcattatctccgtaagctgaaatgttgggccttgat 11227891  T
Q  360 tcaaaatctttagtggctcccttcttttccttaa 393  Q
    ||||||||||| ||| ||  ||| ||||||||||    
T  11227890 tcaaaatctttggtgtctttcttgttttccttaa 11227857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 370
Target Start/End: Complemental strand, 54459310 - 54459100
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||| | | ||||| |||||| | ||  |||||| |||| |   ||||    
T  54459310 catcaatgtcattgtctccataagctgaaatattgggtcttggttcaaaatctttgactggtttcttcttttcatcagcatcaatgacattttctccata 54459211  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    ||||||||| || ||||| | |||||||| |||| |||||||||| ||||| || |||||||| || || ||||||||||| ||||||||||  | ||||    
T  54459210 agctgaaatattaggtctaggttcaaaatctttaatggctccattcttttcttttacatcaatgtcattgtctccataagctgaaatgttggaccttggt 54459111  T
Q  360 tcaaaatcttt 370  Q
    ||||| |||||    
T  54459110 tcaaagtcttt 54459100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 421
Target Start/End: Complemental strand, 54469236 - 54469061
Alignment:
Q  246 tcattgttatcataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaa 345  Q
    ||||||||  |||| | ||||| ||||||||||| |||||||| |||| || |||| || ||||||||||||||||| ||  ||||||||||||| ||||    
T  54469236 tcattgtttccatatgttgaaacgttgggtcttggttcaaaatctttactgactcctttattttccttaacatcaatatcactatctccataagcagaaa 54469137  T
Q  346 tgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
      ||||||| |||||||||||||||| ||||||| || |||||  |||||||||| | |||||||||||| |||||    
T  54469136 cattgggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctga 54469061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 54459388 - 54459127
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||||||| | |||| ||||||||| ||||| ||||| ||||| |||||||| ||||  |||  ||  |||||||||   |||||||||||||   ||||    
T  54459388 catcaatgacattgtctccataagctgaaatgttgggtcttggctcaaaatcgttggtggctcccttattttccttaacatcaatgtcattgtctccata 54459289  T
Q  260 agctgaaatgttgggtcttgattcaaaattttt-agtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtgg 358  Q
    ||||||||| |||||||||| |||||||| ||| | ||| | | || ||||| | | |||||||  | || ||||||||||| ||||| || ||||  ||    
T  54459288 agctgaaatattgggtcttggttcaaaatctttgactggtttc-ttcttttcatcagcatcaatgacattttctccataagctgaaatattaggtctagg 54459190  T
Q  359 ttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||||| ||||||| |||||||| || |||||||| ||||||||||||||||||||    
T  54459189 ttcaaaatctttaatggctccattcttttcttttacatcaatgtcattgtctccataagctga 54459127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 11241693 - 11241585
Alignment:
Q  180 taagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttg 279  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  ||||||||||||| || || ||||    
T  11241693 taagctgaaatatttggccttggttcaaaatctttggcagctttctccttttccttggtgtcaatatcattgttgccataagctgaaatatttggccttg 11241594  T
Q  280 attcaaaat 288  Q
     ||||||||    
T  11241593 gttcaaaat 11241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 158 - 421
Target Start/End: Complemental strand, 11241247 - 11240984
Alignment:
Q  158 agcatcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatca 257  Q
    |||||||||| | |||| ||||||||||||||| ||||| | |||||||||||| ||  | |||  || |||||| | |   || |||||||| ||  ||    
T  11241247 agcatcaatggcattgtctccataagccgaaatgttgggtcgtggttcaaaatccttaccggctgccttcttttcatgaacatcgatgtcattctttcca 11241148  T
Q  258 taagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtg 357  Q
    |||||||||||||| ||||||| ||  |||   |||||||||   || ||||| || |||||||| || || ||||||||||  ||||| ||||||| ||    
T  11241147 taagctgaaatgtttggtcttggtttgaaaccattagtggcttgcttcttttctttgacatcaatgtcattttctccataagttgaaatattgggtcttg 11241048  T
Q  358 gttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||| |||| |||||||||||| ||||||||||||  ||||||||||  |||||||    
T  11241047 gttcaaaatcttcagtgactcccttctttttcttaacatcaatgacattgtctccgcaagctga 11240984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 421
Target Start/End: Complemental strand, 11240917 - 11240672
Alignment:
Q  176 tccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggt 275  Q
    ||||||||||||||||||||| |||||||||||||| || || |||  || |||||| |||   || || ||||| |   ||||||||||||||||||||    
T  11240917 tccataagccgaaatattgggtcttggttcaaaatccttagcggctgccttcttttcattaacatcgatatcattttctccataagctgaaatgttgggt 11240818  T
Q  276 cttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtgg 375  Q
    |||| ||| ||||  ||| ||| |   || ||||  || |||||| | || || ||||| ||||| ||||| ||||||| |||||||||||||||||||     
T  11240817 cttggttcgaaatcattaatggtttgcttcttttgtttgacatcactgtcattttctccgtaagctgaaatattgggtcttggttcaaaatctttagtga 11240718  T
Q  376 ctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||||  ||||||||||   |||||||| | ||||||||    
T  11240717 ctcccttcttttttttaacatcaacgacattgtcttcgtaagctga 11240672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 54459911 - 54459820
Alignment:
Q  330 tctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||| ||||||||||||| ||| |||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  54459911 tctccataagctgaaatgttgggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgtctccataagctga 54459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 421
Target Start/End: Complemental strand, 11241011 - 11240750
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||||||| | |||| |||  |||| |||||| | || |||||||| ||||||||| | ||||||| ||||||||||   || ||| ||| ||   ||||    
T  11241011 catcaatgacattgtctccgcaagctgaaatactaggtcttggttcgaaatctttgacggctttcttcttttccttaacatctatgacatcgtctccata 11240912  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    ||| ||||| |||||||||| ||||||||  |||| |||| | || ||||| |||||||| || || || ||||||||||| ||||||||||||| ||||    
T  11240911 agccgaaatattgggtcttggttcaaaatccttagcggctgccttcttttcattaacatcgatatcattttctccataagctgaaatgttgggtcttggt 11240812  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    || ||||| ||| ||| |  ||||||||  || |||||| | ||||| ||||| ||||||||    
T  11240811 tcgaaatcattaatggtttgcttcttttgtttgacatcactgtcattttctccgtaagctga 11240750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 417
Target Start/End: Complemental strand, 11241323 - 11241066
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcata 259  Q
    |||||||||| |||| ||||||||| ||||| || || |||||||||||||| || |  |||  |  |||||||||||  |||||| ||||||   ||||    
T  11241323 catcaatgtcattgtctccataagctgaaatgtttggtcttggttcaaaatcattagtggctcccctcttttccttagcatcaatggcattgtctccata 11241224  T
Q  260 agctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggt 359  Q
    ||| ||||||||||||| || ||||||||  |||  |||| | || ||||| | |||||| || || || | ||||||||| |||||||| |||| ||||    
T  11241223 agccgaaatgttgggtcgtggttcaaaatccttaccggctgccttcttttcatgaacatcgatgtcattctttccataagctgaaatgtttggtcttggt 11241124  T
Q  360 tcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataag 417  Q
    |  ||| | |||||||||  ||||||||| || |||||||| ||||| ||||||||||    
T  11241123 ttgaaaccattagtggcttgcttcttttctttgacatcaatgtcattttctccataag 11241066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 371
Target Start/End: Complemental strand, 54459693 - 54459477
Alignment:
Q  155 atcagcatcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgtta 254  Q
    ||||||||||||| | |||| ||||||||||||||| || ||  |||||| |||||||||    | ||||| | |||| | |   |||||| ||||||      
T  54459693 atcagcatcaatgacattgtctccataagccgaaatgtttggttttggtttaaaatctttaattggtttcttcatttcatcatcatcaatggcattgtct 54459594  T
Q  255 tcataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtc 354  Q
     ||||||||||||| || ||||||| ||| |||| ||||||  |||| || ||||| ||||||||||| || || |||||| |||| |||||||||||||    
T  54459593 ccataagctgaaatatttggtcttggttcgaaatctttagtatctcccttcttttcattaacatcaatgtcattgtctccaaaagctgaaatgttgggtc 54459494  T
Q  355 gtggttcaaaatcttta 371  Q
     ||||||||||||||||    
T  54459493 ttggttcaaaatcttta 54459477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 198 - 418
Target Start/End: Complemental strand, 54469362 - 54469142
Alignment:
Q  198 cttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttgattcaaaatttttagtgg 297  Q
    ||||||||||||||||||| | | |||| ||||| | ||   |||||||||||||| | ||| ||||||| ||||| ||||| |||||||  |||| ||     
T  54469362 cttggttcaaaatctttggtaacgttcttctttttcataacatcaatgtcattgtttttatacgctgaaacgttggctcttggttcaaaagctttattga 54469263  T
Q  298 ctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatc 397  Q
    || | || |||||  ||||||| || || || | |||||| |  |||| |||||||| |||||||||||||||| || |||| || ||||||||||||||    
T  54469262 cttctttattttctgtaacatcgatatcattgtttccatatgttgaaacgttgggtcttggttcaaaatctttactgactcctttattttccttaacatc 54469163  T
Q  398 aatctcattgtctccataagc 418  Q
    ||| ||| | |||||||||||    
T  54469162 aatatcactatctccataagc 54469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 11241387 - 11241296
Alignment:
Q  330 tctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||| ||||||||||||| |||||| ||||||||  ||||||||| |||||  ||||||||||| ||||||||||||||||||||    
T  11241387 tctccataagctgaaatgttgggtcttggttcgaaatctttgatggctccctcctttttattaacatcaatgtcattgtctccataagctga 11241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 370
Target Start/End: Complemental strand, 54459907 - 54459793
Alignment:
Q  256 cataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcg 355  Q
    ||||||||||||||||||||||||  |||||||  || ||| |||| || ||||| ||||||||||| || || ||||||||||| |||||||||| ||     
T  54459907 cataagctgaaatgttgggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgtctccataagctgaaatgttggttct 54459808  T
Q  356 tggttcaaaatcttt 370  Q
    |||||||||||||||    
T  54459807 tggttcaaaatcttt 54459793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 371
Target Start/End: Complemental strand, 11240679 - 11240488
Alignment:
Q  180 taagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgttatcataagctgaaatgttgggtcttg 279  Q
    ||||| |||||||| || |||||||| ||||||||| |  |||||| ||||||||||   || ||| ||||||   |||| |||||||||||||||| ||    
T  11240679 taagctgaaatattaggtcttggttcgaaatctttgacgactttcttcttttccttaacatctatggcattgtctccatatgctgaaatgttgggtcgtg 11240580  T
Q  280 attcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatcttta 371  Q
      ||||||| ||||  ||  || || |||||||||   ||||| || || ||||||||||| ||||||||||||| ||||||||||||||||    
T  11240579 gctcaaaatctttaacggtacctttcttttccttattttcaatgtcattgtctccataagctgaaatgttgggtcttggttcaaaatcttta 11240488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 54459596 - 54459505
Alignment:
Q  330 tctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||| ||||| || |||| |||||| |||||||||||  ||||||||||||| ||||||||||| |||||||||||| |||||||    
T  54459596 tctccataagctgaaatatttggtcttggttcgaaatctttagtatctcccttcttttcattaacatcaatgtcattgtctccaaaagctga 54459505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 421
Target Start/End: Complemental strand, 54469148 - 54468980
Alignment:
Q  256 cataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgt---tggg 352  Q
    ||||||| ||||  |||||||||| |||||||| |||| ||||||| || |||||  |||||||||| |  || |||||||| || |||| ||   | ||    
T  54469148 cataagcagaaacattgggtcttggttcaaaatctttattggctcctttattttctgtaacatcaatattattgtctccatatgctgaaacgtaatttgg 54469049  T
Q  353 tcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    || ||||||||||||  || ||||||| || |||||||||||||||||  |||||||||||||||||||    
T  54469048 tcttggttcaaaatccgtattggctcctttattttccttaacatcaataccattgtctccataagctga 54468980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 421
Target Start/End: Complemental strand, 11240631 - 11240516
Alignment:
Q  306 ttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcat 405  Q
    |||||||||||||| ||  | || |||||||| || ||||||||||||||||| ||||||||||||  ||  || ||||||||||||   ||||| ||||    
T  11240631 ttttccttaacatctatggcattgtctccatatgctgaaatgttgggtcgtggctcaaaatctttaacggtacctttcttttccttattttcaatgtcat 11240532  T
Q  406 tgtctccataagctga 421  Q
    ||||||||||||||||    
T  11240531 tgtctccataagctga 11240516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 421
Target Start/End: Complemental strand, 11240757 - 11240594
Alignment:
Q  258 taagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtg 357  Q
    ||||||||||| |||||||||| |||||||| ||||||| |||| || ||||  ||||||||||   | || ||| | ||||| ||||| || |||| ||    
T  11240757 taagctgaaatattgggtcttggttcaaaatctttagtgactcccttcttttttttaacatcaacgacattgtcttcgtaagctgaaatattaggtcttg 11240658  T
Q  358 gttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||| ||||||||   | ||  |||||||||||||||||| ||  ||||||||||||| |||||    
T  11240657 gttcgaaatctttgacgactttcttcttttccttaacatctatggcattgtctccatatgctga 11240594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 11241834 - 11241740
Alignment:
Q  18 aacatgaagctgcaacgacttatttaaatatgttacatcacatattgaagttgcattctatttcattattacatttaatgatcagatttagtgaca 113  Q
    |||||||||  ||||| |||||||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||||||  ||| | |||||||||||    
T  11241834 aacatgaagtggcaacaacttattttaatatgctacatcatataatgaagttgcattcta-ttcattattacatttatggataatatttagtgaca 11241740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 416
Target Start/End: Original strand, 49745049 - 49745192
Alignment:
Q  273 ggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttag 372  Q
    ||||||| || ||||| |||| ||||  | |||||||||||  |||||||| | || ||||| |||    ||| ||| |||| ||||||||||||||||     
T  49745049 ggtcttggtttaaaatctttattggccaccttgttttcctttgcatcaatcgcattgtctccgtaaagaaaaaagttaggtcttggttcaaaatctttat 49745148  T
Q  373 tggctcccttcttttccttaacatcaatctcattgtctccataa 416  Q
    |||||||||| ||| ||||  |||||||||||||||||||||||    
T  49745149 tggctcccttgtttgcctttgcatcaatctcattgtctccataa 49745192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 418
Target Start/End: Complemental strand, 11241087 - 11240909
Alignment:
Q  240 tcaatgtcattgttatcataagctgaaatgttgggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataag 339  Q
    ||||||||||| |   |||||| |||||| |||||||||| |||||||| || |||| |||| || |||| ||||||||||||  | || |||||  |||    
T  11241087 tcaatgtcattttctccataagttgaaatattgggtcttggttcaaaatcttcagtgactcccttctttttcttaacatcaatgacattgtctccgcaag 11240988  T
Q  340 ccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagc 418  Q
    | |||||  | |||| |||||| ||||||||   ||||  |||||||||||||||||| ||  ||| ||||||||||||    
T  11240987 ctgaaatactaggtcttggttcgaaatctttgacggctttcttcttttccttaacatctatgacatcgtctccataagc 11240909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 54459932 - 54459797
Alignment:
Q  153 ttatcagcatcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttggcagctttctccttttccttagtgtcaatgtcattgt 252  Q
    |||| |||||||||| | |||| ||||||||| ||||| ||||| ||||| |||||||| ||||   ||  || |||||| |||   |||||||||||||    
T  54459932 ttattagcatcaatgacattgtctccataagctgaaatgttgggtcttggctcaaaatcgttggtgactcccttcttttctttaacatcaatgtcattgt 54459833  T
Q  253 tatcataagctgaaatgttgggtcttgattcaaaat 288  Q
       |||||||||||||||||| ||||| ||||||||    
T  54459832 ctccataagctgaaatgttggttcttggttcaaaat 54459797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 54468837 - 54468746
Alignment:
Q  330 tctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    ||||||||||| ||||  ||||||| |||||||||||| | | |  |||||||||| |||||| ||||||| |||||  |||||||||||||    
T  54468837 tctccataagctgaaacattgggtcttggttcaaaatcatcaataactcccttcttatccttagcatcaatttcatttgctccataagctga 54468746  T

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Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 54468889 - 54468824
Alignment:
Q  356 tggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||||| ||||  ||||||||||| |||| | ||||  ||||||||||||||||||||    
T  54468889 tggttcaaaatcttcagtgattcccttctttttcttagcttcaacgtcattgtctccataagctga 54468824  T

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Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 11240541 - 11240489
Alignment:
Q  162 tcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatcttt 214  Q
    |||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||    
T  11240541 tcaatgtcattgtctccataagctgaaatgttgggtcttggttcaaaatcttt 11240489  T

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Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 49743917 - 49743985
Alignment:
Q  66 agttgcattctatttcattattacatttaatg-atcagatttagtgacacttggcttgggttcaaaatc 133  Q
    ||||||||||||||||||||||||  || ||| |||| |||||| |||||||| |||||| ||||||||    
T  49743917 agttgcattctatttcattattacggtttatgcatcatatttagcgacacttgacttgggctcaaaatc 49743985  T

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Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 54459154 - 54459099
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttg 215  Q
    |||||||||| |||| ||||||||| ||||| |||| |||||||||||| ||||||    
T  54459154 catcaatgtcattgtctccataagctgaaatgttggaccttggttcaaagtctttg 54459099  T

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Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 421
Target Start/End: Complemental strand, 54459674 - 54459583
Alignment:
Q  330 tctccataagccgaaatgttgggtcgtggttcaaaatctttagtggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
    |||||||||||||||||||| |||  ||||| |||||||||| | | |  |||| |||| | | |||||||  |||||||||||||||||||    
T  54459674 tctccataagccgaaatgtttggttttggtttaaaatctttaattggtttcttcatttcatcatcatcaatggcattgtctccataagctga 54459583  T

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Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 54459847 - 54459792
Alignment:
Q  160 catcaatgtcgttgtttccataagccgaaatattgggccttggttcaaaatctttg 215  Q
    |||||||||| |||| ||||||||| ||||| ||||  ||||||||||||||||||    
T  54459847 catcaatgtcattgtctccataagctgaaatgttggttcttggttcaaaatctttg 54459792  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 421
Target Start/End: Complemental strand, 54469050 - 54468902
Alignment:
Q  273 ggtcttgattcaaaatttttagtggctccattgttttccttaacatcaatctcgttatctccataagccgaaatgttgggtcgtggttcaaaatctttag 372  Q
    ||||||| ||||||||   || ||||||| || |||||||||||||||||  | || ||||||||||| ||||  || |||| |||||  |||||||||     
T  54469050 ggtcttggttcaaaatccgtattggctcctttattttccttaacatcaataccattgtctccataagctgaaacatttggtcttggtttgaaatctttaa 54468951  T
Q  373 tggctcccttcttttccttaacatcaatctcattgtctccataagctga 421  Q
     | ||  ||||||| ||||||| || |   ||||||||||||| |||||    
T  54468950 cgactttcttctttcccttaacttctacaccattgtctccatatgctga 54468902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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